miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 132584 0.67 0.942363
Target:  5'- cGGAGCggcaaaacguaucUgggGCUGGGAAAGauggaaAGGGCCgGCa -3'
miRNA:   3'- -CCUCG-------------A---CGACCUUUUCg-----UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 35794 0.67 0.941894
Target:  5'- cGGAGCaaacccaaaccCUGGGAAAGCgaGGGGCCcGUg -3'
miRNA:   3'- -CCUCGac---------GACCUUUUCG--UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 73205 0.67 0.950386
Target:  5'- aGGGGCUcCUGGcguucucgaucaucGAGAGCAGGGC--GCa -3'
miRNA:   3'- -CCUCGAcGACC--------------UUUUCGUCUCGgaCG- -5'
28919 5' -53.4 NC_006146.1 + 122213 0.67 0.955692
Target:  5'- cGGAGCgGCgGGcGAGGgAG-GCCgGCg -3'
miRNA:   3'- -CCUCGaCGaCCuUUUCgUCuCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 138695 0.67 0.933028
Target:  5'- gGGAGUUGgUGGAGuauCAGAgGgCUGCg -3'
miRNA:   3'- -CCUCGACgACCUUuucGUCU-CgGACG- -5'
28919 5' -53.4 NC_006146.1 + 168519 0.67 0.933028
Target:  5'- aGAGCccuCUGGAAGcccGCGGAcGCCUGUc -3'
miRNA:   3'- cCUCGac-GACCUUUu--CGUCU-CGGACG- -5'
28919 5' -53.4 NC_006146.1 + 43218 0.67 0.938053
Target:  5'- gGGGcGCUGCUGGu-GAGaGGAGCCc-- -3'
miRNA:   3'- -CCU-CGACGACCuuUUCgUCUCGGacg -5'
28919 5' -53.4 NC_006146.1 + 103623 0.67 0.938053
Target:  5'- cGGAGCUcgcaaGCUGGcacgcGGAGGaGGGGCCcGCc -3'
miRNA:   3'- -CCUCGA-----CGACC-----UUUUCgUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 49246 0.67 0.938053
Target:  5'- uGGAGaagGCUGGAugcucuGAGGCGGAGaaggggGCg -3'
miRNA:   3'- -CCUCga-CGACCU------UUUCGUCUCgga---CG- -5'
28919 5' -53.4 NC_006146.1 + 15293 0.68 0.904165
Target:  5'- cGGAGCgagggGgaGGAGGGGCcGGAgGCCaGCc -3'
miRNA:   3'- -CCUCGa----CgaCCUUUUCG-UCU-CGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 61824 0.68 0.904165
Target:  5'- aGGGGC-GCUGGuGGGGGCAGuggGGCUggUGCc -3'
miRNA:   3'- -CCUCGaCGACC-UUUUCGUC---UCGG--ACG- -5'
28919 5' -53.4 NC_006146.1 + 64194 0.68 0.904165
Target:  5'- aGGAGUUGCaaGGuGucGCGGAGCUccgGCa -3'
miRNA:   3'- -CCUCGACGa-CCuUuuCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 48981 0.68 0.927754
Target:  5'- uGAGC-GuCUGGGAGAGCuGAuUCUGCa -3'
miRNA:   3'- cCUCGaC-GACCUUUUCGuCUcGGACG- -5'
28919 5' -53.4 NC_006146.1 + 48012 0.68 0.927754
Target:  5'- gGGAgGCUugGCgGGGGAGGCAcggcGGGCCgGCu -3'
miRNA:   3'- -CCU-CGA--CGaCCUUUUCGU----CUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 39701 0.68 0.910434
Target:  5'- -cAGCgccGCUccGGA--GGCAGAGgCCUGCa -3'
miRNA:   3'- ccUCGa--CGA--CCUuuUCGUCUC-GGACG- -5'
28919 5' -53.4 NC_006146.1 + 138112 0.68 0.910434
Target:  5'- aGGAGgUGCUGcGggGAuaGGcAGCCgGCu -3'
miRNA:   3'- -CCUCgACGAC-CuuUUcgUC-UCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 150685 0.68 0.916456
Target:  5'- gGGAGUgGCcagggGGAcggAGGGCcuGGCCUGCg -3'
miRNA:   3'- -CCUCGaCGa----CCU---UUUCGucUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 158388 0.68 0.910434
Target:  5'- cGGGCUGCgcgaaGGGGuuGCAcGAGUaCUGCa -3'
miRNA:   3'- cCUCGACGa----CCUUuuCGU-CUCG-GACG- -5'
28919 5' -53.4 NC_006146.1 + 123051 0.68 0.916456
Target:  5'- cGGGC-GCUGGAGGAGaggguccucgAGAGCC-GCg -3'
miRNA:   3'- cCUCGaCGACCUUUUCg---------UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 100008 0.68 0.92223
Target:  5'- gGGAGCggGCacgucgGGAGGcGGCGGGGUCcGCg -3'
miRNA:   3'- -CCUCGa-CGa-----CCUUU-UCGUCUCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.