miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 150530 0.77 0.450541
Target:  5'- gGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 153608 0.77 0.450541
Target:  5'- gGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 14554 0.77 0.459951
Target:  5'- uGGAGCUGCUGGGccgcuuucGGGGCGuGAGCCc-- -3'
miRNA:   3'- -CCUCGACGACCU--------UUUCGU-CUCGGacg -5'
28919 5' -53.4 NC_006146.1 + 144374 0.77 0.450541
Target:  5'- gGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 156685 0.77 0.450541
Target:  5'- uGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 147452 0.77 0.450541
Target:  5'- gGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 149953 0.76 0.508474
Target:  5'- aGGGGCgcccagGCguugGGAGuggGGGcCAGGGCCUGCa -3'
miRNA:   3'- -CCUCGa-----CGa---CCUU---UUC-GUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 153544 0.76 0.508474
Target:  5'- uGGGGCUGCuUGGGAAcGGUGGAG-CUGCc -3'
miRNA:   3'- -CCUCGACG-ACCUUU-UCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 96073 0.76 0.498587
Target:  5'- aGGAGCUGCacaccaGGAuua--AGAGCCUGCg -3'
miRNA:   3'- -CCUCGACGa-----CCUuuucgUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 142554 0.76 0.508474
Target:  5'- cGGuGCaGCcuaGGcuAGGCGGAGCCUGCg -3'
miRNA:   3'- -CCuCGaCGa--CCuuUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 127726 0.76 0.518443
Target:  5'- aGGAGCUGaUGGGGcuGGGCcggAGAGCCUGg -3'
miRNA:   3'- -CCUCGACgACCUU--UUCG---UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 88803 0.76 0.508474
Target:  5'- uGGAGcCUGCUGGGcauguuuGGCuGGGCCUGa -3'
miRNA:   3'- -CCUC-GACGACCUuu-----UCGuCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 111890 0.75 0.569321
Target:  5'- cGGGGCagUGCUGGu-GAGCAGGGCUUcGUu -3'
miRNA:   3'- -CCUCG--ACGACCuuUUCGUCUCGGA-CG- -5'
28919 5' -53.4 NC_006146.1 + 169198 0.74 0.610887
Target:  5'- cGGAGaCaGCa-GAAAcAGCAGAGCCUGCa -3'
miRNA:   3'- -CCUC-GaCGacCUUU-UCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 38111 0.74 0.652715
Target:  5'- -cAGCUGCU-GAGcAGCugcGAGCCUGCa -3'
miRNA:   3'- ccUCGACGAcCUUuUCGu--CUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 23120 0.74 0.620294
Target:  5'- --cGCUGCUcuuccugGGAGAGGCcgGGAGCCUGg -3'
miRNA:   3'- ccuCGACGA-------CCUUUUCG--UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 88964 0.74 0.62134
Target:  5'- uGGAGcCUGCUGGGAAuguuguGGCuGGGGCUgagGCu -3'
miRNA:   3'- -CCUC-GACGACCUUU------UCG-UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 51831 0.74 0.631801
Target:  5'- cGGGGCgGCgUGGAGGGGggcuCGGGGCCUGg -3'
miRNA:   3'- -CCUCGaCG-ACCUUUUC----GUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 69254 0.74 0.642262
Target:  5'- uGGAGgaGCUGGAGGAGguGgacgaacggcGGCCguUGCc -3'
miRNA:   3'- -CCUCgaCGACCUUUUCguC----------UCGG--ACG- -5'
28919 5' -53.4 NC_006146.1 + 95090 0.73 0.673561
Target:  5'- uGGGGUUGCUGGAAc--CuGGGCCUGa -3'
miRNA:   3'- -CCUCGACGACCUUuucGuCUCGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.