miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 86453 0.73 0.70454
Target:  5'- aGGGGCaGCUGGGcuuuGAGGgGGcAGCCUGg -3'
miRNA:   3'- -CCUCGaCGACCU----UUUCgUC-UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 144959 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 141881 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 122146 0.73 0.683935
Target:  5'- cGGcGGCUGCUGGAGgccGGGCgcaaggagaaGGAGCUgcUGCg -3'
miRNA:   3'- -CC-UCGACGACCUU---UUCG----------UCUCGG--ACG- -5'
28919 5' -53.4 NC_006146.1 + 95578 0.73 0.673561
Target:  5'- cGGAGCUagauguuuCUGG---GGCGGGGCCUGUa -3'
miRNA:   3'- -CCUCGAc-------GACCuuuUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 95090 0.73 0.673561
Target:  5'- uGGGGUUGCUGGAAc--CuGGGCCUGa -3'
miRNA:   3'- -CCUCGACGACCUUuucGuCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 39861 0.73 0.662108
Target:  5'- gGGGGCUGUgugcccGGggGAGgAGgcugaggcugagcGGCCUGCg -3'
miRNA:   3'- -CCUCGACGa-----CCuuUUCgUC-------------UCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 100275 0.73 0.70454
Target:  5'- uGGAGCcuccuaGCggGGGcuGGCAG-GCCUGCa -3'
miRNA:   3'- -CCUCGa-----CGa-CCUuuUCGUCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 60915 0.73 0.70454
Target:  5'- aGGAGCUGUuucgcaccgcggUGGA--GGUAGAGaCUGCu -3'
miRNA:   3'- -CCUCGACG------------ACCUuuUCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 48322 0.73 0.694265
Target:  5'- cGGAGgUGCUGGcgguGguGGGCCagGCg -3'
miRNA:   3'- -CCUCgACGACCuuuuCguCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 148037 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 154193 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 151115 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 157271 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 132063 0.73 0.694265
Target:  5'- --cGCUGCUGGAcguGAGCugccccaggcucAGGGCCUGg -3'
miRNA:   3'- ccuCGACGACCUu--UUCG------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 170174 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 169243 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 168311 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 167379 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 55025 0.73 0.683935
Target:  5'- gGGGGCggGCgGGAugggggucGGGGcCGGGGCCUGCc -3'
miRNA:   3'- -CCUCGa-CGaCCU--------UUUC-GUCUCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.