miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 155329 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 152251 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 146095 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 95521 0.72 0.72489
Target:  5'- gGGAGCUGUcGGGu--GCGGcGCCUGg -3'
miRNA:   3'- -CCUCGACGaCCUuuuCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 149173 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 14164 0.72 0.748861
Target:  5'- uGGAGCUgagcgucugcgccagGCUGGAccccCGGAGCCUGg -3'
miRNA:   3'- -CCUCGA---------------CGACCUuuucGUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 149451 0.72 0.728922
Target:  5'- aGAGCuUGCggcucagcuccgUGGAGAAGCAGAGCUcccccauggggacccUGCc -3'
miRNA:   3'- cCUCG-ACG------------ACCUUUUCGUCUCGG---------------ACG- -5'
28919 5' -53.4 NC_006146.1 + 123331 0.72 0.734944
Target:  5'- -cAGCUGCUGGAAGAGgGGgugacgguuguaGGCC-GCg -3'
miRNA:   3'- ccUCGACGACCUUUUCgUC------------UCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 14119 0.72 0.72489
Target:  5'- cGGGGCUGCUGGc--GGCGGccuacAGCCagGUg -3'
miRNA:   3'- -CCUCGACGACCuuuUCGUC-----UCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 122402 0.72 0.734944
Target:  5'- cGGAGgUGCUGGAGAcccucacGCGGAuCCUGg -3'
miRNA:   3'- -CCUCgACGACCUUUu------CGUCUcGGACg -5'
28919 5' -53.4 NC_006146.1 + 143017 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 158408 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 88584 0.71 0.77413
Target:  5'- uGGAGCUGgUGGG--GGCuGGGgCUGUu -3'
miRNA:   3'- -CCUCGACgACCUuuUCGuCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 66048 0.71 0.802162
Target:  5'- -aAGCUGCcGGAGGAGCuGAcGCgCUGUg -3'
miRNA:   3'- ccUCGACGaCCUUUUCGuCU-CG-GACG- -5'
28919 5' -53.4 NC_006146.1 + 120551 0.71 0.783619
Target:  5'- uGGAuCUccacggGCUGGAAAAcCAGAGCCUGg -3'
miRNA:   3'- -CCUcGA------CGACCUUUUcGUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 42685 0.71 0.792966
Target:  5'- uGGGCUGcCUGaGGcuGGCAGAGCCccccaGCg -3'
miRNA:   3'- cCUCGAC-GAC-CUuuUCGUCUCGGa----CG- -5'
28919 5' -53.4 NC_006146.1 + 12862 0.71 0.811197
Target:  5'- uGGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- -CCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 166082 0.71 0.77413
Target:  5'- uGGuguGCUGCUGGugu-GCuggaGGAGCCUGa -3'
miRNA:   3'- -CCu--CGACGACCuuuuCG----UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92253 0.71 0.792966
Target:  5'- uGGcuGCUGCUGGggG-GCGG-GCCcgGCc -3'
miRNA:   3'- -CCu-CGACGACCuuUuCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 79774 0.71 0.782676
Target:  5'- cGAGaggGCUGGAGAauacuuaGGCGGAGCggGCg -3'
miRNA:   3'- cCUCga-CGACCUUU-------UCGUCUCGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.