miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 79322 0.7 0.845553
Target:  5'- cGGAGCUGaaCUGuGAGGGCGGAacugcuGCgCUGCa -3'
miRNA:   3'- -CCUCGAC--GACcUUUUCGUCU------CG-GACG- -5'
28919 5' -53.4 NC_006146.1 + 9940 0.7 0.845553
Target:  5'- aGGAGCaGCUGagcGAAAAGCcuGGCCaugGCg -3'
miRNA:   3'- -CCUCGaCGAC---CUUUUCGucUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 68950 0.7 0.837248
Target:  5'- cGGAGCcccuaGCcagGGGgcAGGGCAGAGCC-GCu -3'
miRNA:   3'- -CCUCGa----CGa--CCU--UUUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 123016 0.7 0.820062
Target:  5'- cGGAGCUGCUGaccGAGGCcGAGgCgGCc -3'
miRNA:   3'- -CCUCGACGACcu-UUUCGuCUCgGaCG- -5'
28919 5' -53.4 NC_006146.1 + 115559 0.7 0.820062
Target:  5'- gGGGGCUGgaGGcGAccgcGGCccuacucgAGAGCCUGUc -3'
miRNA:   3'- -CCUCGACgaCCuUU----UCG--------UCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 49056 0.7 0.820062
Target:  5'- cGAGCguaggggGCUGGAucGAAGgAGGGCUgagGCu -3'
miRNA:   3'- cCUCGa------CGACCU--UUUCgUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 44632 0.7 0.819183
Target:  5'- uGGGGUggaGCUGGAGAGGCgucucccaagcccGGGcGCCUGg -3'
miRNA:   3'- -CCUCGa--CGACCUUUUCG-------------UCU-CGGACg -5'
28919 5' -53.4 NC_006146.1 + 86543 0.7 0.845553
Target:  5'- aGGGGCaGCUGGGcuugaGGGGCAGcugGGCUUGa -3'
miRNA:   3'- -CCUCGaCGACCU-----UUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 86577 0.7 0.845553
Target:  5'- aGGGGCaGCUGGGcuugaGGGGCAGcugGGCUUGa -3'
miRNA:   3'- -CCUCGaCGACCU-----UUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 141546 0.7 0.853655
Target:  5'- uGGGGCUGgacUUGGGAcaguGAGCucaGGAGCCgggGCc -3'
miRNA:   3'- -CCUCGAC---GACCUU----UUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 89926 0.7 0.833871
Target:  5'- cGGAGCUGCguuggcugcaaaggUGGcacuggaGGAAGCAGuGCCgGUg -3'
miRNA:   3'- -CCUCGACG--------------ACC-------UUUUCGUCuCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 8947 0.7 0.837248
Target:  5'- --uGggGCUGGGGAAGUuuAGCCUGCu -3'
miRNA:   3'- ccuCgaCGACCUUUUCGucUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 54876 0.7 0.837248
Target:  5'- uGGGCUGCgGGcguAGCGGGGUCcGCu -3'
miRNA:   3'- cCUCGACGaCCuuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 90088 0.7 0.845553
Target:  5'- gGGGGgaGCagUGGAGGcAGCGGAGCaggagGCa -3'
miRNA:   3'- -CCUCgaCG--ACCUUU-UCGUCUCGga---CG- -5'
28919 5' -53.4 NC_006146.1 + 51465 0.7 0.853655
Target:  5'- aGAGgUG-UGGAGAugGGCGGGGgCUGCg -3'
miRNA:   3'- cCUCgACgACCUUU--UCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 76952 0.7 0.861548
Target:  5'- uGGAGgUcGcCUGGGAcggaGAGCGGAGCCccGCc -3'
miRNA:   3'- -CCUCgA-C-GACCUU----UUCGUCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 156935 0.7 0.853655
Target:  5'- uGGGGCUGgacUUGGGAcaguGAGCucaGGAGCCgggGCc -3'
miRNA:   3'- -CCUCGAC---GACCUU----UUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 153857 0.7 0.853655
Target:  5'- uGGGGCUGgacUUGGGAcaguGAGCucaGGAGCCgggGCc -3'
miRNA:   3'- -CCUCGAC---GACCUU----UUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 150779 0.7 0.853655
Target:  5'- uGGGGCUGgacUUGGGAcaguGAGCucaGGAGCCgggGCc -3'
miRNA:   3'- -CCUCGAC---GACCUU----UUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 144624 0.7 0.853655
Target:  5'- uGGGGCUGgacUUGGGAcaguGAGCucaGGAGCCgggGCc -3'
miRNA:   3'- -CCUCGAC---GACCUU----UUCG---UCUCGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.