miRNA display CGI


Results 101 - 120 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 139624 0.69 0.879596
Target:  5'- uGGAGCcGaugGGGGAGGCauguguugaggaggaGGAGgCCUGCa -3'
miRNA:   3'- -CCUCGaCga-CCUUUUCG---------------UCUC-GGACG- -5'
28919 5' -53.4 NC_006146.1 + 86491 0.69 0.876678
Target:  5'- aGGGGCaGCUGGGccuugaGGGGCAGcugGGCUUGa -3'
miRNA:   3'- -CCUCGaCGACCU------UUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 141451 0.69 0.897651
Target:  5'- gGGAGUgGCcagGGAGGAcGgAGGGCCUGg -3'
miRNA:   3'- -CCUCGaCGa--CCUUUU-CgUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 51583 0.69 0.883904
Target:  5'- gGGAGggGCccGGggGAGCcagaGGGGCCaGCg -3'
miRNA:   3'- -CCUCgaCGa-CCuuUUCG----UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 108860 0.69 0.883904
Target:  5'- gGGAacGCUgacgGCUGGAAugcGGCAGAgGCCgaGCg -3'
miRNA:   3'- -CCU--CGA----CGACCUUu--UCGUCU-CGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 36112 0.69 0.890896
Target:  5'- gGGAcccGCUGCUGGGugGGGGUuguGGCCUGg -3'
miRNA:   3'- -CCU---CGACGACCU--UUUCGuc-UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 166263 0.69 0.890896
Target:  5'- cGGGGUauaUGUucUGGGcccGCAGGGUCUGCa -3'
miRNA:   3'- -CCUCG---ACG--ACCUuuuCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 110107 0.69 0.897651
Target:  5'- -uAGUUGUUGGccAGGCAGAcGCCggGCa -3'
miRNA:   3'- ccUCGACGACCuuUUCGUCU-CGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 86277 0.69 0.897651
Target:  5'- uGGAGacaauucuaCUGCUGuaacGAGAGCAGAagcggcauguGCCUGCc -3'
miRNA:   3'- -CCUC---------GACGACc---UUUUCGUCU----------CGGACG- -5'
28919 5' -53.4 NC_006146.1 + 43276 0.69 0.876678
Target:  5'- aGGGCgGcCUGGAGGuccGGCAGGuGCCUaGCg -3'
miRNA:   3'- cCUCGaC-GACCUUU---UCGUCU-CGGA-CG- -5'
28919 5' -53.4 NC_006146.1 + 115013 0.69 0.869224
Target:  5'- uGGAGCUGgUGGAGcgggGAGCAGGGg---- -3'
miRNA:   3'- -CCUCGACgACCUU----UUCGUCUCggacg -5'
28919 5' -53.4 NC_006146.1 + 144529 0.69 0.897651
Target:  5'- gGGAGUgGCcagGGAGGAcGgAGGGCCUGg -3'
miRNA:   3'- -CCUCGaCGa--CCUUUU-CgUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 147607 0.69 0.897651
Target:  5'- gGGAGUgGCcagGGAGGAcGgAGGGCCUGg -3'
miRNA:   3'- -CCUCGaCGa--CCUUUU-CgUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 153762 0.69 0.897651
Target:  5'- gGGAGUgGCcagGGAGGAcGgAGGGCCUGg -3'
miRNA:   3'- -CCUCGaCGa--CCUUUU-CgUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 156840 0.69 0.897651
Target:  5'- gGGAGUgGCcagGGAGGAcGgAGGGCCUGg -3'
miRNA:   3'- -CCUCGaCGa--CCUUUU-CgUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 53066 0.69 0.897651
Target:  5'- gGGAGCaacGCggUGGccguGgAGAGCCUGCa -3'
miRNA:   3'- -CCUCGa--CG--ACCuuuuCgUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 72503 0.69 0.869224
Target:  5'- -uGGCUGCagcgccugcGGAGGAGCGGAcGgCUGCg -3'
miRNA:   3'- ccUCGACGa--------CCUUUUCGUCU-CgGACG- -5'
28919 5' -53.4 NC_006146.1 + 18713 0.69 0.869224
Target:  5'- uGGGCUGCUcGAgGAGGCAGAGaCUGa -3'
miRNA:   3'- cCUCGACGAcCU-UUUCGUCUCgGACg -5'
28919 5' -53.4 NC_006146.1 + 139358 0.69 0.869224
Target:  5'- aGGGGCgGCgccgGGggGGGU---GCCUGCu -3'
miRNA:   3'- -CCUCGaCGa---CCuuUUCGucuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 14935 0.69 0.897651
Target:  5'- cGGAGCUGCucuacUGGAAcucuGGC--AGCCaUGCu -3'
miRNA:   3'- -CCUCGACG-----ACCUUu---UCGucUCGG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.