miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 149338 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 152416 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 155494 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 66885 0.67 0.951646
Target:  5'- uGGuGCUGCUGGAGGugcugucGCAGAuguggaaCCUGa -3'
miRNA:   3'- -CCuCGACGACCUUUu------CGUCUc------GGACg -5'
28919 5' -53.4 NC_006146.1 + 60617 0.67 0.951646
Target:  5'- uGGGGCUGC-GG-AGAGUAucacGUCUGCg -3'
miRNA:   3'- -CCUCGACGaCCuUUUCGUcu--CGGACG- -5'
28919 5' -53.4 NC_006146.1 + 40027 0.67 0.951646
Target:  5'- gGGGGcCUGCUGGG--GGCcGuAGCCgacuccgGCg -3'
miRNA:   3'- -CCUC-GACGACCUuuUCGuC-UCGGa------CG- -5'
28919 5' -53.4 NC_006146.1 + 73205 0.67 0.950386
Target:  5'- aGGGGCUcCUGGcguucucgaucaucGAGAGCAGGGC--GCa -3'
miRNA:   3'- -CCUCGAcGACC--------------UUUUCGUCUCGgaCG- -5'
28919 5' -53.4 NC_006146.1 + 27910 0.67 0.94736
Target:  5'- gGGAGCUGCUcccacggccaaGGGcuAGGGCGGAacccCCUGg -3'
miRNA:   3'- -CCUCGACGA-----------CCU--UUUCGUCUc---GGACg -5'
28919 5' -53.4 NC_006146.1 + 15941 0.67 0.94736
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCgGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 39967 0.67 0.94736
Target:  5'- -cGGCUGgggaaGGAGAGGCuGAGgCUGCu -3'
miRNA:   3'- ccUCGACga---CCUUUUCGuCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 161305 0.67 0.94736
Target:  5'- aGGAGCUGCuuagcgUGGuGAAGCcccuGAcCCUGUc -3'
miRNA:   3'- -CCUCGACG------ACCuUUUCGu---CUcGGACG- -5'
28919 5' -53.4 NC_006146.1 + 131437 0.67 0.94736
Target:  5'- cGGAGCcaccacgGCacaaguuauGAGGAGCAGGGCCcagUGCa -3'
miRNA:   3'- -CCUCGa------CGac-------CUUUUCGUCUCGG---ACG- -5'
28919 5' -53.4 NC_006146.1 + 122861 0.67 0.94736
Target:  5'- cGGGGC-GCUGGAcGAcCcGAGCCgGCc -3'
miRNA:   3'- -CCUCGaCGACCUuUUcGuCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 21216 0.67 0.94736
Target:  5'- uGGAGCUGgUcaGGAAAAc---GGCCUGCa -3'
miRNA:   3'- -CCUCGACgA--CCUUUUcgucUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 97858 0.67 0.946918
Target:  5'- gGGGGCcGCcgaccccgggccgUGGAAcgaGGGCcuGAGCCUGUu -3'
miRNA:   3'- -CCUCGaCG-------------ACCUU---UUCGu-CUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 51877 0.67 0.942829
Target:  5'- uGGGGaUGaagagGGGAGGGUGGAGgCUGCg -3'
miRNA:   3'- -CCUCgACga---CCUUUUCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 36221 0.67 0.942829
Target:  5'- gGGAGCgcaagccgGCcgGGGagGAGGCAGGGCg-GCu -3'
miRNA:   3'- -CCUCGa-------CGa-CCU--UUUCGUCUCGgaCG- -5'
28919 5' -53.4 NC_006146.1 + 86611 0.67 0.942829
Target:  5'- aGGGGCaGCUGGGcuuGAGgGGcAGCUggGCa -3'
miRNA:   3'- -CCUCGaCGACCUu--UUCgUC-UCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 120062 0.67 0.942829
Target:  5'- uGGcGCUGCUGcgccGGGAAGaCGGAGCCc-- -3'
miRNA:   3'- -CCuCGACGAC----CUUUUC-GUCUCGGacg -5'
28919 5' -53.4 NC_006146.1 + 132584 0.67 0.942363
Target:  5'- cGGAGCggcaaaacguaucUgggGCUGGGAAAGauggaaAGGGCCgGCa -3'
miRNA:   3'- -CCUCG-------------A---CGACCUUUUCg-----UCUCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.