miRNA display CGI


Results 41 - 60 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 46914 0.66 0.969563
Target:  5'- cGGAGaag--GGAGagGAGCAcgugcuGAGCCUGCu -3'
miRNA:   3'- -CCUCgacgaCCUU--UUCGU------CUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 47748 0.66 0.96308
Target:  5'- aGGGGCUGgccCUGGGGAcGgAGAGCg-GCc -3'
miRNA:   3'- -CCUCGAC---GACCUUUuCgUCUCGgaCG- -5'
28919 5' -53.4 NC_006146.1 + 48012 0.68 0.927754
Target:  5'- gGGAgGCUugGCgGGGGAGGCAcggcGGGCCgGCu -3'
miRNA:   3'- -CCU-CGA--CGaCCUUUUCGU----CUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 48322 0.73 0.694265
Target:  5'- cGGAGgUGCUGGcgguGguGGGCCagGCg -3'
miRNA:   3'- -CCUCgACGACCuuuuCguCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 48704 0.66 0.959502
Target:  5'- cGGGGaCUacGuCUGGGAgugaggAGGCAGAGCagaUGCu -3'
miRNA:   3'- -CCUC-GA--C-GACCUU------UUCGUCUCGg--ACG- -5'
28919 5' -53.4 NC_006146.1 + 48981 0.68 0.927754
Target:  5'- uGAGC-GuCUGGGAGAGCuGAuUCUGCa -3'
miRNA:   3'- cCUCGaC-GACCUUUUCGuCUcGGACG- -5'
28919 5' -53.4 NC_006146.1 + 49056 0.7 0.820062
Target:  5'- cGAGCguaggggGCUGGAucGAAGgAGGGCUgagGCu -3'
miRNA:   3'- cCUCGa------CGACCU--UUUCgUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 49246 0.67 0.938053
Target:  5'- uGGAGaagGCUGGAugcucuGAGGCGGAGaaggggGCg -3'
miRNA:   3'- -CCUCga-CGACCU------UUUCGUCUCgga---CG- -5'
28919 5' -53.4 NC_006146.1 + 51172 0.67 0.933028
Target:  5'- uGGGCUG-UGGAGccGgGGAGgCUGCu -3'
miRNA:   3'- cCUCGACgACCUUuuCgUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 51465 0.7 0.853655
Target:  5'- aGAGgUG-UGGAGAugGGCGGGGgCUGCg -3'
miRNA:   3'- cCUCgACgACCUUU--UCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 51583 0.69 0.883904
Target:  5'- gGGAGggGCccGGggGAGCcagaGGGGCCaGCg -3'
miRNA:   3'- -CCUCgaCGa-CCuuUUCG----UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 51831 0.74 0.631801
Target:  5'- cGGGGCgGCgUGGAGGGGggcuCGGGGCCUGg -3'
miRNA:   3'- -CCUCGaCG-ACCUUUUC----GUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 51877 0.67 0.942829
Target:  5'- uGGGGaUGaagagGGGAGGGUGGAGgCUGCg -3'
miRNA:   3'- -CCUCgACga---CCUUUUCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 53066 0.69 0.897651
Target:  5'- gGGAGCaacGCggUGGccguGgAGAGCCUGCa -3'
miRNA:   3'- -CCUCGa--CG--ACCuuuuCgUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 54876 0.7 0.837248
Target:  5'- uGGGCUGCgGGcguAGCGGGGUCcGCu -3'
miRNA:   3'- cCUCGACGaCCuuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 55025 0.73 0.683935
Target:  5'- gGGGGCggGCgGGAugggggucGGGGcCGGGGCCUGCc -3'
miRNA:   3'- -CCUCGa-CGaCCU--------UUUC-GUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 55586 0.69 0.890896
Target:  5'- cGGGGUgccguagGuCUGGucccAGAGCAGGGCCUcGUa -3'
miRNA:   3'- -CCUCGa------C-GACCu---UUUCGUCUCGGA-CG- -5'
28919 5' -53.4 NC_006146.1 + 57578 0.66 0.969563
Target:  5'- aGGAGCUGaccuucGGGGCGGuuGCCUGUc -3'
miRNA:   3'- -CCUCGACgaccu-UUUCGUCu-CGGACG- -5'
28919 5' -53.4 NC_006146.1 + 58107 0.66 0.969563
Target:  5'- uGGGGC-GCaacgGGAGGcAGgAGAGCgUGCc -3'
miRNA:   3'- -CCUCGaCGa---CCUUU-UCgUCUCGgACG- -5'
28919 5' -53.4 NC_006146.1 + 60278 0.66 0.966432
Target:  5'- cGGGgaGCgGGAGuuuGCGGAG-CUGCu -3'
miRNA:   3'- cCUCgaCGaCCUUuu-CGUCUCgGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.