miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 86453 0.73 0.70454
Target:  5'- aGGGGCaGCUGGGcuuuGAGGgGGcAGCCUGg -3'
miRNA:   3'- -CCUCGaCGACCU----UUUCgUC-UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 86491 0.69 0.876678
Target:  5'- aGGGGCaGCUGGGccuugaGGGGCAGcugGGCUUGa -3'
miRNA:   3'- -CCUCGaCGACCU------UUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 86543 0.7 0.845553
Target:  5'- aGGGGCaGCUGGGcuugaGGGGCAGcugGGCUUGa -3'
miRNA:   3'- -CCUCGaCGACCU-----UUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 86577 0.7 0.845553
Target:  5'- aGGGGCaGCUGGGcuugaGGGGCAGcugGGCUUGa -3'
miRNA:   3'- -CCUCGaCGACCU-----UUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 86611 0.67 0.942829
Target:  5'- aGGGGCaGCUGGGcuuGAGgGGcAGCUggGCa -3'
miRNA:   3'- -CCUCGaCGACCUu--UUCgUC-UCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 88360 0.66 0.959502
Target:  5'- aGGcaAGCUGCcagGGAAAGGCuGAuauuaccagGCgUGCa -3'
miRNA:   3'- -CC--UCGACGa--CCUUUUCGuCU---------CGgACG- -5'
28919 5' -53.4 NC_006146.1 + 88584 0.71 0.77413
Target:  5'- uGGAGCUGgUGGG--GGCuGGGgCUGUu -3'
miRNA:   3'- -CCUCGACgACCUuuUCGuCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 88803 0.76 0.508474
Target:  5'- uGGAGcCUGCUGGGcauguuuGGCuGGGCCUGa -3'
miRNA:   3'- -CCUC-GACGACCUuu-----UCGuCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 88964 0.74 0.62134
Target:  5'- uGGAGcCUGCUGGGAAuguuguGGCuGGGGCUgagGCu -3'
miRNA:   3'- -CCUC-GACGACCUUU------UCG-UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 89926 0.7 0.833871
Target:  5'- cGGAGCUGCguuggcugcaaaggUGGcacuggaGGAAGCAGuGCCgGUg -3'
miRNA:   3'- -CCUCGACG--------------ACC-------UUUUCGUCuCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 90045 0.66 0.969563
Target:  5'- uGGAGCaggagguggUGCUGGAgGGAGCcuaGGAGgCggUGCa -3'
miRNA:   3'- -CCUCG---------ACGACCU-UUUCG---UCUCgG--ACG- -5'
28919 5' -53.4 NC_006146.1 + 90088 0.7 0.845553
Target:  5'- gGGGGgaGCagUGGAGGcAGCGGAGCaggagGCa -3'
miRNA:   3'- -CCUCgaCG--ACCUUU-UCGUCUCGga---CG- -5'
28919 5' -53.4 NC_006146.1 + 92012 0.8 0.346672
Target:  5'- uGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92042 0.78 0.441237
Target:  5'- nGGGGCUGCUGcuGggGGGCGG-GCCcgGCc -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 92072 0.8 0.316073
Target:  5'- uGGGGCUGCUGcuGggGGGCGGcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC---UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92101 0.8 0.346672
Target:  5'- nGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92131 0.8 0.346672
Target:  5'- nGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92161 0.8 0.346672
Target:  5'- nGGGGCUGCUGcuGggGGGCGGgcccGGCCUGg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACg -5'
28919 5' -53.4 NC_006146.1 + 92191 0.78 0.441237
Target:  5'- nGGGGCUGCUGcuGggGGGCGG-GCCcgGCc -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 92221 0.83 0.230862
Target:  5'- uGGGGCUGCUGcuGggGGGCGGgcccGGCCUGUg -3'
miRNA:   3'- -CCUCGACGAC--CuuUUCGUC----UCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.