miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 166082 0.71 0.77413
Target:  5'- uGGuguGCUGCUGGugu-GCuggaGGAGCCUGa -3'
miRNA:   3'- -CCu--CGACGACCuuuuCG----UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 163215 0.66 0.966432
Target:  5'- aGGAGCcggGCaGGccguAGGCAGGGUagcgCUGCu -3'
miRNA:   3'- -CCUCGa--CGaCCuu--UUCGUCUCG----GACG- -5'
28919 5' -53.4 NC_006146.1 + 161305 0.67 0.94736
Target:  5'- aGGAGCUGCuuagcgUGGuGAAGCcccuGAcCCUGUc -3'
miRNA:   3'- -CCUCGACG------ACCuUUUCGu---CUcGGACG- -5'
28919 5' -53.4 NC_006146.1 + 158573 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 158500 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 158408 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 158388 0.68 0.910434
Target:  5'- cGGGCUGCgcgaaGGGGuuGCAcGAGUaCUGCa -3'
miRNA:   3'- cCUCGACGa----CCUUuuCGU-CUCG-GACG- -5'
28919 5' -53.4 NC_006146.1 + 157641 0.66 0.958384
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAggacagagagAGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCU----------UUUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 157271 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 156935 0.7 0.853655
Target:  5'- uGGGGCUGgacUUGGGAcaguGAGCucaGGAGCCgggGCc -3'
miRNA:   3'- -CCUCGAC---GACCUU----UUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 156840 0.69 0.897651
Target:  5'- gGGAGUgGCcagGGAGGAcGgAGGGCCUGg -3'
miRNA:   3'- -CCUCGaCGa--CCUUUU-CgUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 156685 0.77 0.450541
Target:  5'- uGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 155926 0.66 0.959502
Target:  5'- -aGGCU--UGGAu-GGCGGAGCCgGCg -3'
miRNA:   3'- ccUCGAcgACCUuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 155494 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 155421 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 155329 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 154881 0.67 0.955692
Target:  5'- aGAGCccGUcGGggG-GCAGGGCCUcGCc -3'
miRNA:   3'- cCUCGa-CGaCCuuUuCGUCUCGGA-CG- -5'
28919 5' -53.4 NC_006146.1 + 154784 0.68 0.92223
Target:  5'- uGGAGgUGCaGGuAGAGCAGGGCa--- -3'
miRNA:   3'- -CCUCgACGaCCuUUUCGUCUCGgacg -5'
28919 5' -53.4 NC_006146.1 + 154563 0.66 0.962031
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAGgacagagagagGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCUU-----------UUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 154193 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.