miRNA display CGI


Results 41 - 60 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 153857 0.7 0.853655
Target:  5'- uGGGGCUGgacUUGGGAcaguGAGCucaGGAGCCgggGCc -3'
miRNA:   3'- -CCUCGAC---GACCUU----UUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 153762 0.69 0.897651
Target:  5'- gGGAGUgGCcagGGAGGAcGgAGGGCCUGg -3'
miRNA:   3'- -CCUCGaCGa--CCUUUU-CgUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 153608 0.77 0.450541
Target:  5'- gGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 153544 0.76 0.508474
Target:  5'- uGGGGCUGCuUGGGAAcGGUGGAG-CUGCc -3'
miRNA:   3'- -CCUCGACG-ACCUUU-UCGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 152848 0.66 0.959502
Target:  5'- -aGGCU--UGGAu-GGCGGAGCCgGCg -3'
miRNA:   3'- ccUCGAcgACCUuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 152416 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 152343 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 152251 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 151485 0.66 0.962031
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAGgacagagagagGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCUU-----------UUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 151115 0.73 0.683935
Target:  5'- -aGGCUGCUGGGGAc-CAGGGCCUccuggGCg -3'
miRNA:   3'- ccUCGACGACCUUUucGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 150779 0.7 0.853655
Target:  5'- uGGGGCUGgacUUGGGAcaguGAGCucaGGAGCCgggGCc -3'
miRNA:   3'- -CCUCGAC---GACCUU----UUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 150685 0.68 0.916456
Target:  5'- gGGAGUgGCcagggGGAcggAGGGCcuGGCCUGCg -3'
miRNA:   3'- -CCUCGaCGa----CCU---UUUCGucUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 150574 0.66 0.96308
Target:  5'- cGGAuCUGCUGGccaucguccAGCAcccGCCUGCa -3'
miRNA:   3'- -CCUcGACGACCuuu------UCGUcu-CGGACG- -5'
28919 5' -53.4 NC_006146.1 + 150530 0.77 0.450541
Target:  5'- gGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 149953 0.76 0.508474
Target:  5'- aGGGGCgcccagGCguugGGAGuggGGGcCAGGGCCUGCa -3'
miRNA:   3'- -CCUCGa-----CGa---CCUU---UUC-GUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 149770 0.66 0.959502
Target:  5'- -aGGCU--UGGAu-GGCGGAGCCgGCg -3'
miRNA:   3'- ccUCGAcgACCUuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 149451 0.72 0.728922
Target:  5'- aGAGCuUGCggcucagcuccgUGGAGAAGCAGAGCUcccccauggggacccUGCc -3'
miRNA:   3'- cCUCG-ACG------------ACCUUUUCGUCUCGG---------------ACG- -5'
28919 5' -53.4 NC_006146.1 + 149338 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 149265 0.82 0.254806
Target:  5'- gGGA-CUGUagagGGAGAGGCAGGGCCUGUa -3'
miRNA:   3'- -CCUcGACGa---CCUUUUCGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 149173 0.72 0.753782
Target:  5'- gGGAGCgGCUGGGAuggggaagccgGAGUccagaggggcccgAGGGCCUGa -3'
miRNA:   3'- -CCUCGaCGACCUU-----------UUCG-------------UCUCGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.