miRNA display CGI


Results 81 - 100 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 141451 0.69 0.897651
Target:  5'- gGGAGUgGCcagGGAGGAcGgAGGGCCUGg -3'
miRNA:   3'- -CCUCGaCGa--CCUUUU-CgUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 141296 0.77 0.450541
Target:  5'- gGGGGCgGCUGGggGucgGGCuG-GCCUGCc -3'
miRNA:   3'- -CCUCGaCGACCuuU---UCGuCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 140112 0.66 0.972198
Target:  5'- cGGAGgUGgUGGAAGaggggguGGCGGAGgUggugGCg -3'
miRNA:   3'- -CCUCgACgACCUUU-------UCGUCUCgGa---CG- -5'
28919 5' -53.4 NC_006146.1 + 139624 0.69 0.879596
Target:  5'- uGGAGCcGaugGGGGAGGCauguguugaggaggaGGAGgCCUGCa -3'
miRNA:   3'- -CCUCGaCga-CCUUUUCG---------------UCUC-GGACG- -5'
28919 5' -53.4 NC_006146.1 + 139547 0.67 0.951646
Target:  5'- gGGGGCUGCgUGuGuuGAGUAuaauGAGgCCUGUa -3'
miRNA:   3'- -CCUCGACG-AC-CuuUUCGU----CUC-GGACG- -5'
28919 5' -53.4 NC_006146.1 + 139358 0.69 0.869224
Target:  5'- aGGGGCgGCgccgGGggGGGU---GCCUGCu -3'
miRNA:   3'- -CCUCGaCGa---CCuuUUCGucuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 138695 0.67 0.933028
Target:  5'- gGGAGUUGgUGGAGuauCAGAgGgCUGCg -3'
miRNA:   3'- -CCUCGACgACCUUuucGUCU-CgGACG- -5'
28919 5' -53.4 NC_006146.1 + 138328 0.67 0.932512
Target:  5'- aGGAGCUaagguccGCgagauuUGGGGuAGCGGAGCCUc- -3'
miRNA:   3'- -CCUCGA-------CG------ACCUUuUCGUCUCGGAcg -5'
28919 5' -53.4 NC_006146.1 + 138112 0.68 0.910434
Target:  5'- aGGAGgUGCUGcGggGAuaGGcAGCCgGCu -3'
miRNA:   3'- -CCUCgACGAC-CuuUUcgUC-UCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 136995 0.66 0.966432
Target:  5'- cGGAGgaGCUccaGGAcgGGGGUAG-GCCggGCa -3'
miRNA:   3'- -CCUCgaCGA---CCU--UUUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 134155 0.68 0.916456
Target:  5'- -cGGcCUGC-GGAAcccuaaGAGgGGGGCCUGCa -3'
miRNA:   3'- ccUC-GACGaCCUU------UUCgUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 133491 0.66 0.969563
Target:  5'- cGGGGUgaaacagGgaGGGuucgcGGGGCuuGGGGCCUGCu -3'
miRNA:   3'- -CCUCGa------CgaCCU-----UUUCG--UCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 132584 0.67 0.942363
Target:  5'- cGGAGCggcaaaacguaucUgggGCUGGGAAAGauggaaAGGGCCgGCa -3'
miRNA:   3'- -CCUCG-------------A---CGACCUUUUCg-----UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 132063 0.73 0.694265
Target:  5'- --cGCUGCUGGAcguGAGCugccccaggcucAGGGCCUGg -3'
miRNA:   3'- ccuCGACGACCUu--UUCG------------UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 131437 0.67 0.94736
Target:  5'- cGGAGCcaccacgGCacaaguuauGAGGAGCAGGGCCcagUGCa -3'
miRNA:   3'- -CCUCGa------CGac-------CUUUUCGUCUCGG---ACG- -5'
28919 5' -53.4 NC_006146.1 + 127726 0.76 0.518443
Target:  5'- aGGAGCUGaUGGGGcuGGGCcggAGAGCCUGg -3'
miRNA:   3'- -CCUCGACgACCUU--UUCG---UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 123362 0.66 0.969563
Target:  5'- gGGAGCU-CUGGcgcuGGCcgGGGGCCccGCa -3'
miRNA:   3'- -CCUCGAcGACCuuu-UCG--UCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 123331 0.72 0.734944
Target:  5'- -cAGCUGCUGGAAGAGgGGgugacgguuguaGGCC-GCg -3'
miRNA:   3'- ccUCGACGACCUUUUCgUC------------UCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 123051 0.68 0.916456
Target:  5'- cGGGC-GCUGGAGGAGaggguccucgAGAGCC-GCg -3'
miRNA:   3'- cCUCGaCGACCUUUUCg---------UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 123016 0.7 0.820062
Target:  5'- cGGAGCUGCUGaccGAGGCcGAGgCgGCc -3'
miRNA:   3'- -CCUCGACGACcu-UUUCGuCUCgGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.