miRNA display CGI


Results 101 - 120 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 122861 0.67 0.94736
Target:  5'- cGGGGC-GCUGGAcGAcCcGAGCCgGCc -3'
miRNA:   3'- -CCUCGaCGACCUuUUcGuCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 122402 0.72 0.734944
Target:  5'- cGGAGgUGCUGGAGAcccucacGCGGAuCCUGg -3'
miRNA:   3'- -CCUCgACGACCUUUu------CGUCUcGGACg -5'
28919 5' -53.4 NC_006146.1 + 122213 0.67 0.955692
Target:  5'- cGGAGCgGCgGGcGAGGgAG-GCCgGCg -3'
miRNA:   3'- -CCUCGaCGaCCuUUUCgUCuCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 122146 0.73 0.683935
Target:  5'- cGGcGGCUGCUGGAGgccGGGCgcaaggagaaGGAGCUgcUGCg -3'
miRNA:   3'- -CC-UCGACGACCUU---UUCG----------UCUCGG--ACG- -5'
28919 5' -53.4 NC_006146.1 + 120802 0.66 0.969563
Target:  5'- cGGuccGCgugGCcGGAcAAGCGGGGCC-GCc -3'
miRNA:   3'- -CCu--CGa--CGaCCUuUUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 120551 0.71 0.783619
Target:  5'- uGGAuCUccacggGCUGGAAAAcCAGAGCCUGg -3'
miRNA:   3'- -CCUcGA------CGACCUUUUcGUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 120062 0.67 0.942829
Target:  5'- uGGcGCUGCUGcgccGGGAAGaCGGAGCCc-- -3'
miRNA:   3'- -CCuCGACGAC----CUUUUC-GUCUCGGacg -5'
28919 5' -53.4 NC_006146.1 + 115559 0.7 0.820062
Target:  5'- gGGGGCUGgaGGcGAccgcGGCccuacucgAGAGCCUGUc -3'
miRNA:   3'- -CCUCGACgaCCuUU----UCG--------UCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 115014 0.68 0.916456
Target:  5'- -uGGCUGCUccaGGAAcacGuCAGuGCCUGCa -3'
miRNA:   3'- ccUCGACGA---CCUUuu-C-GUCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 115013 0.69 0.869224
Target:  5'- uGGAGCUGgUGGAGcgggGAGCAGGGg---- -3'
miRNA:   3'- -CCUCGACgACCUU----UUCGUCUCggacg -5'
28919 5' -53.4 NC_006146.1 + 111890 0.75 0.569321
Target:  5'- cGGGGCagUGCUGGu-GAGCAGGGCUUcGUu -3'
miRNA:   3'- -CCUCG--ACGACCuuUUCGUCUCGGA-CG- -5'
28919 5' -53.4 NC_006146.1 + 111706 0.66 0.96308
Target:  5'- gGGAGCccUGCaGGAuGGAGCAG-GCCa-- -3'
miRNA:   3'- -CCUCG--ACGaCCU-UUUCGUCuCGGacg -5'
28919 5' -53.4 NC_006146.1 + 111035 0.67 0.952061
Target:  5'- cGGAGCUGaUGGGcgacaccuccucccuGAGUcacgGGAGCCUGa -3'
miRNA:   3'- -CCUCGACgACCUu--------------UUCG----UCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 110107 0.69 0.897651
Target:  5'- -uAGUUGUUGGccAGGCAGAcGCCggGCa -3'
miRNA:   3'- ccUCGACGACCuuUUCGUCU-CGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 108860 0.69 0.883904
Target:  5'- gGGAacGCUgacgGCUGGAAugcGGCAGAgGCCgaGCg -3'
miRNA:   3'- -CCU--CGA----CGACCUUu--UCGUCU-CGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 107014 0.68 0.918796
Target:  5'- aGGAGaugacGCUGGAGAagcugcacauuuucaAGCAGAaaGCCaGCg -3'
miRNA:   3'- -CCUCga---CGACCUUU---------------UCGUCU--CGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 103623 0.67 0.938053
Target:  5'- cGGAGCUcgcaaGCUGGcacgcGGAGGaGGGGCCcGCc -3'
miRNA:   3'- -CCUCGA-----CGACC-----UUUUCgUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 103089 0.82 0.267524
Target:  5'- cGGAGCUGUUuacuuccgaGGcgGGGCAGAGCCUGg -3'
miRNA:   3'- -CCUCGACGA---------CCuuUUCGUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 102394 0.66 0.966107
Target:  5'- gGGAGCUGgugguaucuguccCUGGGGcGGCcaaAGAGCCauaGCc -3'
miRNA:   3'- -CCUCGAC-------------GACCUUuUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 100275 0.73 0.70454
Target:  5'- uGGAGCcuccuaGCggGGGcuGGCAG-GCCUGCa -3'
miRNA:   3'- -CCUCGa-----CGa-CCUuuUCGUCuCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.