miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 154784 0.68 0.92223
Target:  5'- uGGAGgUGCaGGuAGAGCAGGGCa--- -3'
miRNA:   3'- -CCUCgACGaCCuUUUCGUCUCGgacg -5'
28919 5' -53.4 NC_006146.1 + 170285 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 111890 0.75 0.569321
Target:  5'- cGGGGCagUGCUGGu-GAGCAGGGCUUcGUu -3'
miRNA:   3'- -CCUCG--ACGACCuuUUCGUCUCGGA-CG- -5'
28919 5' -53.4 NC_006146.1 + 168311 0.73 0.663151
Target:  5'- gGGGGCUGaggGGGcucccgAGGGCGGGGCCgggGCc -3'
miRNA:   3'- -CCUCGACga-CCU------UUUCGUCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 48322 0.73 0.694265
Target:  5'- cGGAGgUGCUGGcgguGguGGGCCagGCg -3'
miRNA:   3'- -CCUCgACGACCuuuuCguCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 95521 0.72 0.72489
Target:  5'- gGGAGCUGUcGGGu--GCGGcGCCUGg -3'
miRNA:   3'- -CCUCGACGaCCUuuuCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 120551 0.71 0.783619
Target:  5'- uGGAuCUccacggGCUGGAAAAcCAGAGCCUGg -3'
miRNA:   3'- -CCUcGA------CGACCUUUUcGUCUCGGACg -5'
28919 5' -53.4 NC_006146.1 + 44632 0.7 0.819183
Target:  5'- uGGGGUggaGCUGGAGAGGCgucucccaagcccGGGcGCCUGg -3'
miRNA:   3'- -CCUCGa--CGACCUUUUCG-------------UCU-CGGACg -5'
28919 5' -53.4 NC_006146.1 + 90088 0.7 0.845553
Target:  5'- gGGGGgaGCagUGGAGGcAGCGGAGCaggagGCa -3'
miRNA:   3'- -CCUCgaCG--ACCUUU-UCGUCUCGga---CG- -5'
28919 5' -53.4 NC_006146.1 + 167490 0.66 0.97248
Target:  5'- gGGuGUgccugGCgggGGAGAgggGGCAGGGCUgGCg -3'
miRNA:   3'- -CCuCGa----CGa--CCUUU---UCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 71779 0.66 0.969563
Target:  5'- uGGGGCUGgUGGcgu--UAGGGCUUGUg -3'
miRNA:   3'- -CCUCGACgACCuuuucGUCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 170070 0.66 0.966432
Target:  5'- cGGGGCcGCgcgugGGGAuGGCcggcgggaGGGGCCgGCg -3'
miRNA:   3'- -CCUCGaCGa----CCUUuUCG--------UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 51172 0.67 0.933028
Target:  5'- uGGGCUG-UGGAGccGgGGAGgCUGCu -3'
miRNA:   3'- cCUCGACgACCUUuuCgUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 97858 0.67 0.946918
Target:  5'- gGGGGCcGCcgaccccgggccgUGGAAcgaGGGCcuGAGCCUGUu -3'
miRNA:   3'- -CCUCGaCG-------------ACCUU---UUCGu-CUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 95072 0.67 0.954102
Target:  5'- aGAGCUGCcccUGGugcaugucccGCAGGGCCUcgaagGCg -3'
miRNA:   3'- cCUCGACG---ACCuuuu------CGUCUCGGA-----CG- -5'
28919 5' -53.4 NC_006146.1 + 85885 0.66 0.959502
Target:  5'- cGGGCcacGCUGGAAcuaGGGUgagAGAGCC-GCg -3'
miRNA:   3'- cCUCGa--CGACCUU---UUCG---UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 170415 0.66 0.959502
Target:  5'- gGGGGC-GgaGGggGGggucccGCGGGGCCcgGCg -3'
miRNA:   3'- -CCUCGaCgaCCuuUU------CGUCUCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 19018 0.66 0.966432
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 168220 0.69 0.869224
Target:  5'- gGGAugGCcgGCgGGAGGGGcCGGcGCCUGCa -3'
miRNA:   3'- -CCU--CGa-CGaCCUUUUC-GUCuCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 53066 0.69 0.897651
Target:  5'- gGGAGCaacGCggUGGccguGgAGAGCCUGCa -3'
miRNA:   3'- -CCUCGa--CG--ACCuuuuCgUCUCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.