Results 81 - 100 of 232 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28919 | 5' | -53.4 | NC_006146.1 | + | 150685 | 0.68 | 0.916456 |
Target: 5'- gGGAGUgGCcagggGGAcggAGGGCcuGGCCUGCg -3' miRNA: 3'- -CCUCGaCGa----CCU---UUUCGucUCGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 100008 | 0.68 | 0.92223 |
Target: 5'- gGGAGCggGCacgucgGGAGGcGGCGGGGUCcGCg -3' miRNA: 3'- -CCUCGa-CGa-----CCUUU-UCGUCUCGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 168519 | 0.67 | 0.933028 |
Target: 5'- aGAGCccuCUGGAAGcccGCGGAcGCCUGUc -3' miRNA: 3'- cCUCGac-GACCUUUu--CGUCU-CGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 138695 | 0.67 | 0.933028 |
Target: 5'- gGGAGUUGgUGGAGuauCAGAgGgCUGCg -3' miRNA: 3'- -CCUCGACgACCUUuucGUCU-CgGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 133491 | 0.66 | 0.969563 |
Target: 5'- cGGGGUgaaacagGgaGGGuucgcGGGGCuuGGGGCCUGCu -3' miRNA: 3'- -CCUCGa------CgaCCU-----UUUCG--UCUCGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 123051 | 0.68 | 0.916456 |
Target: 5'- cGGGC-GCUGGAGGAGaggguccucgAGAGCC-GCg -3' miRNA: 3'- cCUCGaCGACCUUUUCg---------UCUCGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 70713 | 0.68 | 0.916456 |
Target: 5'- gGGAGCU-CaGGAGGAGCggGGGGCUuauUGCc -3' miRNA: 3'- -CCUCGAcGaCCUUUUCG--UCUCGG---ACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 158573 | 0.67 | 0.951646 |
Target: 5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3' miRNA: 3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 66885 | 0.67 | 0.951646 |
Target: 5'- uGGuGCUGCUGGAGGugcugucGCAGAuguggaaCCUGa -3' miRNA: 3'- -CCuCGACGACCUUUu------CGUCUc------GGACg -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 60617 | 0.67 | 0.951646 |
Target: 5'- uGGGGCUGC-GG-AGAGUAucacGUCUGCg -3' miRNA: 3'- -CCUCGACGaCCuUUUCGUcu--CGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 157641 | 0.66 | 0.958384 |
Target: 5'- uGGGGCgccgGUccccugguucccccUGGAggacagagagAGGGCAGAGCCaGCc -3' miRNA: 3'- -CCUCGa---CG--------------ACCU----------UUUCGUCUCGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 24191 | 0.66 | 0.959502 |
Target: 5'- aGGGCaGa--GGAGGGCuGGGCCUGCg -3' miRNA: 3'- cCUCGaCgacCUUUUCGuCUCGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 111706 | 0.66 | 0.96308 |
Target: 5'- gGGAGCccUGCaGGAuGGAGCAG-GCCa-- -3' miRNA: 3'- -CCUCG--ACGaCCU-UUUCGUCuCGGacg -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 53066 | 0.69 | 0.897651 |
Target: 5'- gGGAGCaacGCggUGGccguGgAGAGCCUGCa -3' miRNA: 3'- -CCUCGa--CG--ACCuuuuCgUCUCGGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 15293 | 0.68 | 0.904165 |
Target: 5'- cGGAGCgagggGgaGGAGGGGCcGGAgGCCaGCc -3' miRNA: 3'- -CCUCGa----CgaCCUUUUCG-UCU-CGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 122213 | 0.67 | 0.955692 |
Target: 5'- cGGAGCgGCgGGcGAGGgAG-GCCgGCg -3' miRNA: 3'- -CCUCGaCGaCCuUUUCgUCuCGGaCG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 61824 | 0.68 | 0.904165 |
Target: 5'- aGGGGC-GCUGGuGGGGGCAGuggGGCUggUGCc -3' miRNA: 3'- -CCUCGaCGACC-UUUUCGUC---UCGG--ACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 64194 | 0.68 | 0.904165 |
Target: 5'- aGGAGUUGCaaGGuGucGCGGAGCUccgGCa -3' miRNA: 3'- -CCUCGACGa-CCuUuuCGUCUCGGa--CG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 39701 | 0.68 | 0.910434 |
Target: 5'- -cAGCgccGCUccGGA--GGCAGAGgCCUGCa -3' miRNA: 3'- ccUCGa--CGA--CCUuuUCGUCUC-GGACG- -5' |
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28919 | 5' | -53.4 | NC_006146.1 | + | 138112 | 0.68 | 0.910434 |
Target: 5'- aGGAGgUGCUGcGggGAuaGGcAGCCgGCu -3' miRNA: 3'- -CCUCgACGAC-CuuUUcgUC-UCGGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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