miRNA display CGI


Results 61 - 80 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 142251 0.66 0.962031
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAGgacagagagagGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCUU-----------UUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 155926 0.66 0.959502
Target:  5'- -aGGCU--UGGAu-GGCGGAGCCgGCg -3'
miRNA:   3'- ccUCGAcgACCUuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 155494 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 152416 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 149338 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 146260 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 143182 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 139547 0.67 0.951646
Target:  5'- gGGGGCUGCgUGuGuuGAGUAuaauGAGgCCUGUa -3'
miRNA:   3'- -CCUCGACG-AC-CuuUUCGU----CUC-GGACG- -5'
28919 5' -53.4 NC_006146.1 + 40027 0.67 0.951646
Target:  5'- gGGGGcCUGCUGGG--GGCcGuAGCCgacuccgGCg -3'
miRNA:   3'- -CCUC-GACGACCUuuUCGuC-UCGGa------CG- -5'
28919 5' -53.4 NC_006146.1 + 73205 0.67 0.950386
Target:  5'- aGGGGCUcCUGGcguucucgaucaucGAGAGCAGGGC--GCa -3'
miRNA:   3'- -CCUCGAcGACC--------------UUUUCGUCUCGgaCG- -5'
28919 5' -53.4 NC_006146.1 + 158573 0.67 0.951646
Target:  5'- aGGGGCgaggGGAcuGAGGCGG-GCCUGa -3'
miRNA:   3'- -CCUCGacgaCCU--UUUCGUCuCGGACg -5'
28919 5' -53.4 NC_006146.1 + 66885 0.67 0.951646
Target:  5'- uGGuGCUGCUGGAGGugcugucGCAGAuguggaaCCUGa -3'
miRNA:   3'- -CCuCGACGACCUUUu------CGUCUc------GGACg -5'
28919 5' -53.4 NC_006146.1 + 152848 0.66 0.959502
Target:  5'- -aGGCU--UGGAu-GGCGGAGCCgGCg -3'
miRNA:   3'- ccUCGAcgACCUuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 149770 0.66 0.959502
Target:  5'- -aGGCU--UGGAu-GGCGGAGCCgGCg -3'
miRNA:   3'- ccUCGAcgACCUuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 143615 0.66 0.959502
Target:  5'- -aGGCU--UGGAu-GGCGGAGCCgGCg -3'
miRNA:   3'- ccUCGAcgACCUuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 48704 0.66 0.959502
Target:  5'- cGGGGaCUacGuCUGGGAgugaggAGGCAGAGCagaUGCu -3'
miRNA:   3'- -CCUC-GA--C-GACCUU------UUCGUCUCGg--ACG- -5'
28919 5' -53.4 NC_006146.1 + 24191 0.66 0.959502
Target:  5'- aGGGCaGa--GGAGGGCuGGGCCUGCg -3'
miRNA:   3'- cCUCGaCgacCUUUUCGuCUCGGACG- -5'
28919 5' -53.4 NC_006146.1 + 157641 0.66 0.958384
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAggacagagagAGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCU----------UUUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 122213 0.67 0.955692
Target:  5'- cGGAGCgGCgGGcGAGGgAG-GCCgGCg -3'
miRNA:   3'- -CCUCGaCGaCCuUUUCgUCuCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 60617 0.67 0.951646
Target:  5'- uGGGGCUGC-GG-AGAGUAucacGUCUGCg -3'
miRNA:   3'- -CCUCGACGaCCuUUUCGUcu--CGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.