miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28919 5' -53.4 NC_006146.1 + 25174 0.66 0.966432
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 163215 0.66 0.966432
Target:  5'- aGGAGCcggGCaGGccguAGGCAGGGUagcgCUGCu -3'
miRNA:   3'- -CCUCGa--CGaCCuu--UUCGUCUCG----GACG- -5'
28919 5' -53.4 NC_006146.1 + 28252 0.66 0.966432
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 170070 0.66 0.966432
Target:  5'- cGGGGCcGCgcgugGGGAuGGCcggcgggaGGGGCCgGCg -3'
miRNA:   3'- -CCUCGaCGa----CCUUuUCG--------UCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 60278 0.66 0.966432
Target:  5'- cGGGgaGCgGGAGuuuGCGGAG-CUGCu -3'
miRNA:   3'- cCUCgaCGaCCUUuu-CGUCUCgGACG- -5'
28919 5' -53.4 NC_006146.1 + 22096 0.66 0.966432
Target:  5'- uGGGCgagGCUGGGuggcuGGGCAG-GCCggGUc -3'
miRNA:   3'- cCUCGa--CGACCUu----UUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 136995 0.66 0.966432
Target:  5'- cGGAGgaGCUccaGGAcgGGGGUAG-GCCggGCa -3'
miRNA:   3'- -CCUCgaCGA---CCU--UUUCGUCuCGGa-CG- -5'
28919 5' -53.4 NC_006146.1 + 102394 0.66 0.966107
Target:  5'- gGGAGCUGgugguaucuguccCUGGGGcGGCcaaAGAGCCauaGCc -3'
miRNA:   3'- -CCUCGAC-------------GACCUUuUCG---UCUCGGa--CG- -5'
28919 5' -53.4 NC_006146.1 + 150574 0.66 0.96308
Target:  5'- cGGAuCUGCUGGccaucguccAGCAcccGCCUGCa -3'
miRNA:   3'- -CCUcGACGACCuuu------UCGUcu-CGGACG- -5'
28919 5' -53.4 NC_006146.1 + 37879 0.66 0.96308
Target:  5'- aGAGCagGCcGGGcuGGgAGAGuCCUGCc -3'
miRNA:   3'- cCUCGa-CGaCCUuuUCgUCUC-GGACG- -5'
28919 5' -53.4 NC_006146.1 + 111706 0.66 0.96308
Target:  5'- gGGAGCccUGCaGGAuGGAGCAG-GCCa-- -3'
miRNA:   3'- -CCUCG--ACGaCCU-UUUCGUCuCGGacg -5'
28919 5' -53.4 NC_006146.1 + 47748 0.66 0.96308
Target:  5'- aGGGGCUGgccCUGGGGAcGgAGAGCg-GCc -3'
miRNA:   3'- -CCUCGAC---GACCUUUuCgUCUCGgaCG- -5'
28919 5' -53.4 NC_006146.1 + 14628 0.66 0.96308
Target:  5'- uGGcGCUGCgUGGggGAGCucauGGUgCUGCc -3'
miRNA:   3'- -CCuCGACG-ACCuuUUCGuc--UCG-GACG- -5'
28919 5' -53.4 NC_006146.1 + 154563 0.66 0.962031
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAGgacagagagagGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCUU-----------UUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 151485 0.66 0.962031
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAGgacagagagagGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCUU-----------UUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 148407 0.66 0.962031
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAGgacagagagagGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCUU-----------UUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 145329 0.66 0.962031
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAGgacagagagagGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCUU-----------UUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 142251 0.66 0.962031
Target:  5'- uGGGGCgccgGUccccugguucccccUGGAGgacagagagagGGGCAGAGCCaGCc -3'
miRNA:   3'- -CCUCGa---CG--------------ACCUU-----------UUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 155926 0.66 0.959502
Target:  5'- -aGGCU--UGGAu-GGCGGAGCCgGCg -3'
miRNA:   3'- ccUCGAcgACCUuuUCGUCUCGGaCG- -5'
28919 5' -53.4 NC_006146.1 + 24191 0.66 0.959502
Target:  5'- aGGGCaGa--GGAGGGCuGGGCCUGCg -3'
miRNA:   3'- cCUCGaCgacCUUUUCGuCUCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.