Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2892 | 3' | -53.9 | NC_001493.1 | + | 15136 | 0.77 | 0.454027 |
Target: 5'- cCCCCGaGCUCGACgAGGucg-UCCAGg -3' miRNA: 3'- -GGGGCaUGAGCUGgUCCuacaAGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 16233 | 1.12 | 0.003169 |
Target: 5'- gCCCCGUACUCGACCAGGAUGUUCCAGg -3' miRNA: 3'- -GGGGCAUGAGCUGGUCCUACAAGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 16371 | 0.68 | 0.889419 |
Target: 5'- uCCCCGacccaggugcACUCGGCgAGGAUGga-CAGg -3' miRNA: 3'- -GGGGCa---------UGAGCUGgUCCUACaagGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 17841 | 0.7 | 0.826077 |
Target: 5'- uCCCCGUGaggUCGGCgAGGAUGgucgcgcaaaugUCCAc -3' miRNA: 3'- -GGGGCAUg--AGCUGgUCCUACa-----------AGGUc -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 18844 | 0.66 | 0.961703 |
Target: 5'- -gUCGUGCcCGACCGGuGugcGUUCCGGg -3' miRNA: 3'- ggGGCAUGaGCUGGUC-Cua-CAAGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 27639 | 0.72 | 0.72517 |
Target: 5'- gCCCCGaUACcacCGGCCGGGAcaccgaucaGUUCCAGu -3' miRNA: 3'- -GGGGC-AUGa--GCUGGUCCUa--------CAAGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 28528 | 0.69 | 0.875289 |
Target: 5'- uUCCGUG-UCGACCAGGGUGcgCUu- -3' miRNA: 3'- gGGGCAUgAGCUGGUCCUACaaGGuc -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 30630 | 0.66 | 0.961703 |
Target: 5'- gCCUGUACggccUUGuuCAGGAUGUcguucuguUCCAGa -3' miRNA: 3'- gGGGCAUG----AGCugGUCCUACA--------AGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 33202 | 0.75 | 0.561407 |
Target: 5'- uCCCCGaGCUCGGCgCugcGGAUGUUgaCCAGg -3' miRNA: 3'- -GGGGCaUGAGCUG-Gu--CCUACAA--GGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 34410 | 0.66 | 0.94584 |
Target: 5'- aCCCaCGUGCUCGAUCAcGGgcGU--CAGa -3' miRNA: 3'- -GGG-GCAUGAGCUGGU-CCuaCAagGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 36891 | 0.67 | 0.926174 |
Target: 5'- cCCCCGcagucgUUCGGCCAGGGUuacGgaCCGGa -3' miRNA: 3'- -GGGGCau----GAGCUGGUCCUA---CaaGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 41308 | 0.7 | 0.827782 |
Target: 5'- aCCCCGaACaaGAUCGGGAUGaUCUGGa -3' miRNA: 3'- -GGGGCaUGagCUGGUCCUACaAGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 48163 | 0.66 | 0.961703 |
Target: 5'- gCCCGacGCUCGugGCCGGGuuggGggCCGGg -3' miRNA: 3'- gGGGCa-UGAGC--UGGUCCua--CaaGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 48238 | 0.66 | 0.961703 |
Target: 5'- aCCCG-AUagGGCCAGGAUGUUg--- -3' miRNA: 3'- gGGGCaUGagCUGGUCCUACAAgguc -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 52078 | 0.68 | 0.914884 |
Target: 5'- aCCCaggaUACUCGcggGGGGUGUUCCGGg -3' miRNA: 3'- gGGGc---AUGAGCuggUCCUACAAGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 53306 | 0.7 | 0.801486 |
Target: 5'- gUCUCGc-CUCGACCAGGA-GUUCgGGa -3' miRNA: 3'- -GGGGCauGAGCUGGUCCUaCAAGgUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 58900 | 0.66 | 0.953837 |
Target: 5'- uCCCCGUGCUgGACCcaguuAGGGcccaUGUguuacggUCCGu -3' miRNA: 3'- -GGGGCAUGAgCUGG-----UCCU----ACA-------AGGUc -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 87825 | 0.66 | 0.954235 |
Target: 5'- uCCUCGUACgcc-CCGGGggGUaggUCCAGg -3' miRNA: 3'- -GGGGCAUGagcuGGUCCuaCA---AGGUC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 102239 | 0.66 | 0.950155 |
Target: 5'- uCCCCGUugUgaggCGGCCAGGGUcg-CguGg -3' miRNA: 3'- -GGGGCAugA----GCUGGUCCUAcaaGguC- -5' |
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2892 | 3' | -53.9 | NC_001493.1 | + | 109002 | 0.67 | 0.936491 |
Target: 5'- uCCCCGUGCggCGGcuguCCAGGgcGUcguugUCCAu -3' miRNA: 3'- -GGGGCAUGa-GCU----GGUCCuaCA-----AGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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