Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2892 | 5' | -56.2 | NC_001493.1 | + | 43908 | 0.82 | 0.166142 |
Target: 5'- cACCAGGUgCGCUUCGcGuUCAUGGACGCg -3' miRNA: 3'- cUGGUCCA-GCGAGGU-C-AGUACCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 106201 | 0.66 | 0.890993 |
Target: 5'- uGAgUAGGUCGCUCgCGGuggcccuaUCGUugggguucagacgaaGGACGCu -3' miRNA: 3'- -CUgGUCCAGCGAG-GUC--------AGUA---------------CCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 20243 | 0.66 | 0.879172 |
Target: 5'- cGAUCAGGUCuagauaacccucgaGCaaucUCgGGUCGUGcGGCGCc -3' miRNA: 3'- -CUGGUCCAG--------------CG----AGgUCAGUAC-CUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 62312 | 0.66 | 0.874117 |
Target: 5'- uGACCGGGUCGgUCCA--CggGGGCu- -3' miRNA: 3'- -CUGGUCCAGCgAGGUcaGuaCCUGcg -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 41375 | 0.67 | 0.84323 |
Target: 5'- cGACCAGGUCGa-CCgAGaCAUGGAaugaGUa -3' miRNA: 3'- -CUGGUCCAGCgaGG-UCaGUACCUg---CG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 95981 | 0.67 | 0.838319 |
Target: 5'- gGACguGGUCaCUCCcgccgauugucuggcGGUCGcGGGCGCc -3' miRNA: 3'- -CUGguCCAGcGAGG---------------UCAGUaCCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 49922 | 0.68 | 0.791251 |
Target: 5'- uACCAGGUUccugaUCCAGUC--GGugGCg -3' miRNA: 3'- cUGGUCCAGcg---AGGUCAGuaCCugCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 126174 | 0.69 | 0.704144 |
Target: 5'- cGAuCCGGGUC-CUCCgcGGUCGagacucucgGGACGCg -3' miRNA: 3'- -CU-GGUCCAGcGAGG--UCAGUa--------CCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 10620 | 0.69 | 0.704144 |
Target: 5'- cGAuCCGGGUC-CUCCgcGGUCGagacucucgGGACGCg -3' miRNA: 3'- -CU-GGUCCAGcGAGG--UCAGUa--------CCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 37561 | 0.71 | 0.612009 |
Target: 5'- cGACCGGGUCGC-CCGGggagaaGAUGCa -3' miRNA: 3'- -CUGGUCCAGCGaGGUCaguac-CUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 62853 | 0.72 | 0.558942 |
Target: 5'- uGCC-GGUCGCUCCcgugggcuugccGUCGUGGugGUc -3' miRNA: 3'- cUGGuCCAGCGAGGu-----------CAGUACCugCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 112017 | 0.67 | 0.84323 |
Target: 5'- aGAUC-GGUC-CUCCAGgcCGUGGGCGa -3' miRNA: 3'- -CUGGuCCAGcGAGGUCa-GUACCUGCg -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 110357 | 0.68 | 0.78203 |
Target: 5'- uACCGuGGUCGCcCUGGU--UGGGCGCu -3' miRNA: 3'- cUGGU-CCAGCGaGGUCAguACCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 13277 | 0.69 | 0.704144 |
Target: 5'- aGACCGGG--GCUCCAGUCucgGGAUc- -3' miRNA: 3'- -CUGGUCCagCGAGGUCAGua-CCUGcg -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 128831 | 0.69 | 0.704144 |
Target: 5'- aGACCGGG--GCUCCAGUCucgGGAUc- -3' miRNA: 3'- -CUGGUCCagCGAGGUCAGua-CCUGcg -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 23629 | 0.7 | 0.683871 |
Target: 5'- gGGCCGGGUCuCUgCGGUCAUcGGCGg -3' miRNA: 3'- -CUGGUCCAGcGAgGUCAGUAcCUGCg -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 12844 | 0.77 | 0.313442 |
Target: 5'- -cCCGGGUCGCgUCCGGggUcgGGGCGCu -3' miRNA: 3'- cuGGUCCAGCG-AGGUCa-GuaCCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 128398 | 0.77 | 0.313442 |
Target: 5'- -cCCGGGUCGCgUCCGGggUcgGGGCGCu -3' miRNA: 3'- cuGGUCCAGCG-AGGUCa-GuaCCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 16196 | 1.1 | 0.002007 |
Target: 5'- uGACCAGGUCGCUCCAGUCAUGGACGCc -3' miRNA: 3'- -CUGGUCCAGCGAGGUCAGUACCUGCG- -5' |
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2892 | 5' | -56.2 | NC_001493.1 | + | 37626 | 0.66 | 0.895007 |
Target: 5'- --aCAGGUCGCUCCGGgc----ACGCu -3' miRNA: 3'- cugGUCCAGCGAGGUCaguaccUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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