Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28920 | 5' | -54.1 | NC_006146.1 | + | 69865 | 0.66 | 0.955236 |
Target: 5'- gGUCgGGCGUaGAGGCCCaggUCCACGGc- -3' miRNA: 3'- gUAG-UUGCAgUUCCGGG---AGGUGUCcu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 96371 | 0.72 | 0.737679 |
Target: 5'- gCAUCuuUGUC-GGGCUCUgCCGCGGGAc -3' miRNA: 3'- -GUAGuuGCAGuUCCGGGA-GGUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 99126 | 0.66 | 0.962587 |
Target: 5'- --cCGGCcUC-AGGCgUCUCCACAGGGg -3' miRNA: 3'- guaGUUGcAGuUCCG-GGAGGUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 106655 | 0.66 | 0.955236 |
Target: 5'- --cCGGCugGUCAGGGCCgUCCucuccccgggcACGGGAu -3' miRNA: 3'- guaGUUG--CAGUUCCGGgAGG-----------UGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 115783 | 0.66 | 0.951217 |
Target: 5'- aCAUgGAgGUgGAGGCCCUggagCUgaACAGGAu -3' miRNA: 3'- -GUAgUUgCAgUUCCGGGA----GG--UGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 116246 | 0.67 | 0.937739 |
Target: 5'- gGUCuACGaCGGGGcCCCUCCAaugccCGGGGa -3' miRNA: 3'- gUAGuUGCaGUUCC-GGGAGGU-----GUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 118071 | 0.67 | 0.942471 |
Target: 5'- --gCGGCGgCucGGCCCUCCGCAuccuGGGc -3' miRNA: 3'- guaGUUGCaGuuCCGGGAGGUGU----CCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 122656 | 0.69 | 0.854493 |
Target: 5'- --aCGGCGgcgGGGGCCCUCCGCGcGGc -3' miRNA: 3'- guaGUUGCag-UUCCGGGAGGUGU-CCu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 124956 | 0.67 | 0.942471 |
Target: 5'- ---gAGCGUCGAGGUCC-CCAgAGaGAc -3' miRNA: 3'- guagUUGCAGUUCCGGGaGGUgUC-CU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 125850 | 0.66 | 0.955236 |
Target: 5'- uCAUCAAgcccaaggccCG-CGAGGCCCUCCucgaAGGc -3' miRNA: 3'- -GUAGUU----------GCaGUUCCGGGAGGug--UCCu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 129618 | 0.78 | 0.42016 |
Target: 5'- cCGUCucCGUCGccGGGUCCUCCGCGGGc -3' miRNA: 3'- -GUAGuuGCAGU--UCCGGGAGGUGUCCu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 130805 | 0.68 | 0.89783 |
Target: 5'- gCGUgAGCGagcugCAgcacgcgcugcAGGCCCUCCGcCGGGAg -3' miRNA: 3'- -GUAgUUGCa----GU-----------UCCGGGAGGU-GUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 137982 | 0.69 | 0.852122 |
Target: 5'- --gCGGCGUCAaaugcuggggugcaAGGCCCUCCAUAc-- -3' miRNA: 3'- guaGUUGCAGU--------------UCCGGGAGGUGUccu -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 140401 | 0.71 | 0.794778 |
Target: 5'- uGUCAGCucuguGUUggGGCCCgUUgGCAGGAa -3' miRNA: 3'- gUAGUUG-----CAGuuCCGGG-AGgUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 148038 | 0.67 | 0.937739 |
Target: 5'- gAUCGGCGUUggGGCCCaUgAUgaugAGGAg -3' miRNA: 3'- gUAGUUGCAGuuCCGGGaGgUG----UCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 159038 | 0.73 | 0.676187 |
Target: 5'- aGUCAACGUC-GGGCCCgCCccaagcccgagaaGCAGGGc -3' miRNA: 3'- gUAGUUGCAGuUCCGGGaGG-------------UGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 160732 | 0.73 | 0.646344 |
Target: 5'- --aCAGCGUaUAGGGCCCUgaACAGGAg -3' miRNA: 3'- guaGUUGCA-GUUCCGGGAggUGUCCU- -5' |
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28920 | 5' | -54.1 | NC_006146.1 | + | 166532 | 0.66 | 0.959025 |
Target: 5'- ---aAGCGgCAGGGUCCUUgGCAGGu -3' miRNA: 3'- guagUUGCaGUUCCGGGAGgUGUCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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