miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28921 3' -55.5 NC_006146.1 + 79279 0.66 0.895544
Target:  5'- uGGGAgaaucucAGUCUGGGC--CUAGAGCCu -3'
miRNA:   3'- cUCCUa------UUAGACCCGucGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 150449 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 147371 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 144293 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 141215 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 153527 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 122611 0.66 0.895544
Target:  5'- gGAGGGcGAg--GGGCggaggaGGCCGGGGCCc -3'
miRNA:   3'- -CUCCUaUUagaCCCG------UCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 19028 0.66 0.895544
Target:  5'- -uGGGUGG-CUGGGCAGgCCGG-GUCu -3'
miRNA:   3'- cuCCUAUUaGACCCGUC-GGUCuCGGu -5'
28921 3' -55.5 NC_006146.1 + 156605 0.66 0.895544
Target:  5'- uGGGGggAA-CUGGGCAGUggacaCGGGGCUg -3'
miRNA:   3'- -CUCCuaUUaGACCCGUCG-----GUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 14825 0.66 0.895544
Target:  5'- gGAGGAgggcacGGUCUcGGGC--CCGGGGCCGc -3'
miRNA:   3'- -CUCCUa-----UUAGA-CCCGucGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 122250 0.66 0.894876
Target:  5'- cAGGAUucagaagGcgCUGGGCAcccGcCCGGAGCCc -3'
miRNA:   3'- cUCCUA-------UuaGACCCGU---C-GGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 121342 0.67 0.888764
Target:  5'- cGAGGccaugCUGGGCcuGGCCGGcguGGCCu -3'
miRNA:   3'- -CUCCuauuaGACCCG--UCGGUC---UCGGu -5'
28921 3' -55.5 NC_006146.1 + 127724 0.67 0.888764
Target:  5'- cGAGGAgcUGAUg-GGGCugGGCCggAGAGCCu -3'
miRNA:   3'- -CUCCU--AUUAgaCCCG--UCGG--UCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 52709 0.67 0.888764
Target:  5'- cGGGA-GGUCaggGGGCGGCC--GGCCAg -3'
miRNA:   3'- cUCCUaUUAGa--CCCGUCGGucUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 51584 0.67 0.881751
Target:  5'- gGAGGGgcccg-GGGgAGCCAGAgggGCCAg -3'
miRNA:   3'- -CUCCUauuagaCCCgUCGGUCU---CGGU- -5'
28921 3' -55.5 NC_006146.1 + 93887 0.67 0.881751
Target:  5'- aGGGGGgcggAAUUUGcGGCAGggGGGGCCAg -3'
miRNA:   3'- -CUCCUa---UUAGAC-CCGUCggUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 118238 0.67 0.881751
Target:  5'- aGAGGcgGcugcgcacGUaCUGGG-GGCCAGAGCCc -3'
miRNA:   3'- -CUCCuaU--------UA-GACCCgUCGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 39392 0.67 0.879602
Target:  5'- aGGGGGUGGuUCUGGGCcacauggacuugaaGcagaaguugGCCGGGGCCu -3'
miRNA:   3'- -CUCCUAUU-AGACCCG--------------U---------CGGUCUCGGu -5'
28921 3' -55.5 NC_006146.1 + 61586 0.67 0.874509
Target:  5'- uGAGGAaGAgccggCUGcagcggccGCGGCCGGGGCCGa -3'
miRNA:   3'- -CUCCUaUUa----GACc-------CGUCGGUCUCGGU- -5'
28921 3' -55.5 NC_006146.1 + 56175 0.67 0.867045
Target:  5'- uGAGGAUgcgccGAUaCUcGGCcGCCAGGGCCc -3'
miRNA:   3'- -CUCCUA-----UUA-GAcCCGuCGGUCUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.