miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 3' -63.8 NC_006146.1 + 167360 0.66 0.585948
Target:  5'- aCGCGcGGCgGcGCcgGCCGGG-GGCUGa -3'
miRNA:   3'- -GCGCcUCGaC-CGuaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 56659 0.66 0.584985
Target:  5'- ---cGAGCUGGCccucccugagGUGCCGGGCccccuggGGCUGg -3'
miRNA:   3'- gcgcCUCGACCG----------UACGGUCCG-------CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 147335 0.66 0.580175
Target:  5'- aGCuGGGGUagaucuugacaucuuUGcGCGUGUC-GGCGGCCGc -3'
miRNA:   3'- gCG-CCUCG---------------AC-CGUACGGuCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 137219 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 135918 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 135361 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136011 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136290 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136940 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 137498 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 137312 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 137405 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 137033 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136754 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 136197 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 135732 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 135454 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 135640 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 135825 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 135175 0.66 0.576333
Target:  5'- -cUGGAGCUcGGg--GCCGGG-GGCCGg -3'
miRNA:   3'- gcGCCUCGA-CCguaCGGUCCgCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.