miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 5' -53.8 NC_006146.1 + 152416 0.67 0.911459
Target:  5'- uGGCccauGGCAUGUugACGaGCgAGCUCGUc -3'
miRNA:   3'- -CCGu---UCGUGCGugUGUaCG-UCGAGUA- -5'
28922 5' -53.8 NC_006146.1 + 128282 0.68 0.90518
Target:  5'- uGGCGuGGCACGUcaGCACGUGCuuCUCc- -3'
miRNA:   3'- -CCGU-UCGUGCG--UGUGUACGucGAGua -5'
28922 5' -53.8 NC_006146.1 + 49935 0.68 0.90518
Target:  5'- uGGCccagcAGCGCGCACuCGUGaCGGUUCu- -3'
miRNA:   3'- -CCGu----UCGUGCGUGuGUAC-GUCGAGua -5'
28922 5' -53.8 NC_006146.1 + 9892 0.68 0.90518
Target:  5'- aGGUAcGCAUGCACACGgcaUGgGGCUgAg -3'
miRNA:   3'- -CCGUuCGUGCGUGUGU---ACgUCGAgUa -5'
28922 5' -53.8 NC_006146.1 + 169704 0.68 0.901293
Target:  5'- aGGCGAGCAauaaaagggacagaGCAUACA-GCAGC-CAc -3'
miRNA:   3'- -CCGUUCGUg-------------CGUGUGUaCGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 54782 0.68 0.897985
Target:  5'- gGGCcgccaggGAGCGCGCcUugG-GCAGCUCGUu -3'
miRNA:   3'- -CCG-------UUCGUGCGuGugUaCGUCGAGUA- -5'
28922 5' -53.8 NC_006146.1 + 40082 0.68 0.891877
Target:  5'- cGGCGgagGGCcUGCAgCGCGugcUGCAGCUCGc -3'
miRNA:   3'- -CCGU---UCGuGCGU-GUGU---ACGUCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 37204 0.68 0.884861
Target:  5'- gGGCAauGGCugGCcCACGUGaauGCUCu- -3'
miRNA:   3'- -CCGU--UCGugCGuGUGUACgu-CGAGua -5'
28922 5' -53.8 NC_006146.1 + 2238 0.69 0.862408
Target:  5'- gGGCAcaaAGUACGUguuGCGCGUGgAGCUUg- -3'
miRNA:   3'- -CCGU---UCGUGCG---UGUGUACgUCGAGua -5'
28922 5' -53.8 NC_006146.1 + 162417 0.69 0.854475
Target:  5'- uGGUggGCACGgGCuagGgGUGuCAGCUCAc -3'
miRNA:   3'- -CCGuuCGUGCgUG---UgUAC-GUCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 114411 0.69 0.846327
Target:  5'- cGGCccgacuGCGCGCGCugAUGCcGCUgGa -3'
miRNA:   3'- -CCGuu----CGUGCGUGugUACGuCGAgUa -5'
28922 5' -53.8 NC_006146.1 + 149648 0.69 0.846327
Target:  5'- aGGuCGAGCACGCGC-CG-GCAGCg--- -3'
miRNA:   3'- -CC-GUUCGUGCGUGuGUaCGUCGagua -5'
28922 5' -53.8 NC_006146.1 + 86260 0.69 0.829421
Target:  5'- aGCAGGCACGUGgGCAgcacgGC-GCUCAc -3'
miRNA:   3'- cCGUUCGUGCGUgUGUa----CGuCGAGUa -5'
28922 5' -53.8 NC_006146.1 + 68175 0.7 0.783975
Target:  5'- gGGCAGGCGCaGCgucaggacgcggGCGCA-GCGGCUCc- -3'
miRNA:   3'- -CCGUUCGUG-CG------------UGUGUaCGUCGAGua -5'
28922 5' -53.8 NC_006146.1 + 138330 0.71 0.754895
Target:  5'- uGCAAGCugGCGggaAUAUGCAGCcCAc -3'
miRNA:   3'- cCGUUCGugCGUg--UGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 753 0.72 0.673027
Target:  5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3'
miRNA:   3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 1684 0.72 0.673027
Target:  5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3'
miRNA:   3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 2616 0.72 0.673027
Target:  5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3'
miRNA:   3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 3548 0.72 0.673027
Target:  5'- cGGCcGGCGcCGcCGCGCGUGCAGC-CGa -3'
miRNA:   3'- -CCGuUCGU-GC-GUGUGUACGUCGaGUa -5'
28922 5' -53.8 NC_006146.1 + 126473 0.73 0.640417
Target:  5'- aGGUAAGCGCGCGCACcuucgGUGUuacuccaAGCUCc- -3'
miRNA:   3'- -CCGUUCGUGCGUGUG-----UACG-------UCGAGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.