miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28924 3' -56.3 NC_006146.1 + 59833 0.66 0.916317
Target:  5'- -cUCgCACGGUGCgGCUCaggcucCCGUGa -3'
miRNA:   3'- aaAGgGUGUCACGgUGAGgu----GGCACc -5'
28924 3' -56.3 NC_006146.1 + 56062 0.66 0.910447
Target:  5'- -cUCCCGCGGgaagGCguC-CCACCG-GGc -3'
miRNA:   3'- aaAGGGUGUCa---CGguGaGGUGGCaCC- -5'
28924 3' -56.3 NC_006146.1 + 67914 0.66 0.910447
Target:  5'- -aUUCCAUAGccCgGC-CCACCGUGGa -3'
miRNA:   3'- aaAGGGUGUCacGgUGaGGUGGCACC- -5'
28924 3' -56.3 NC_006146.1 + 134763 0.66 0.904342
Target:  5'- -gUCCCAgAGUGggauUUCCACgGUGGa -3'
miRNA:   3'- aaAGGGUgUCACggu-GAGGUGgCACC- -5'
28924 3' -56.3 NC_006146.1 + 166408 0.66 0.898005
Target:  5'- --gCCCGcCAGUGCCAuCUCCACa---- -3'
miRNA:   3'- aaaGGGU-GUCACGGU-GAGGUGgcacc -5'
28924 3' -56.3 NC_006146.1 + 80676 0.66 0.891438
Target:  5'- -cUCCCuCGGcUGCCucCUCCACCGc-- -3'
miRNA:   3'- aaAGGGuGUC-ACGGu-GAGGUGGCacc -5'
28924 3' -56.3 NC_006146.1 + 70800 0.66 0.891438
Target:  5'- ---aCCGCAGacuCCugUCCACCGUccGGg -3'
miRNA:   3'- aaagGGUGUCac-GGugAGGUGGCA--CC- -5'
28924 3' -56.3 NC_006146.1 + 42396 0.66 0.884646
Target:  5'- -gUCCUAUcGUGUCuGCUgaacgugcCCGCCGUGGg -3'
miRNA:   3'- aaAGGGUGuCACGG-UGA--------GGUGGCACC- -5'
28924 3' -56.3 NC_006146.1 + 131071 0.66 0.884646
Target:  5'- --gCCCACuGUGCgGCcgaggCCGCCG-GGc -3'
miRNA:   3'- aaaGGGUGuCACGgUGa----GGUGGCaCC- -5'
28924 3' -56.3 NC_006146.1 + 110450 0.66 0.884646
Target:  5'- --cCCCGCGGccUGCCGCUCacucgGCCaUGGu -3'
miRNA:   3'- aaaGGGUGUC--ACGGUGAGg----UGGcACC- -5'
28924 3' -56.3 NC_006146.1 + 40954 0.67 0.877632
Target:  5'- --aCCCACcccagguccGUGCCGuagaCCGCCGUGGu -3'
miRNA:   3'- aaaGGGUGu--------CACGGUga--GGUGGCACC- -5'
28924 3' -56.3 NC_006146.1 + 50192 0.67 0.877632
Target:  5'- -cUCCCGgaucaGGUGCUGCUCCAgCGUc- -3'
miRNA:   3'- aaAGGGUg----UCACGGUGAGGUgGCAcc -5'
28924 3' -56.3 NC_006146.1 + 161962 0.67 0.876918
Target:  5'- cUUCCCuuuCGGgcaacGCCccgugggagaccgGCUCCACgGUGGa -3'
miRNA:   3'- aAAGGGu--GUCa----CGG-------------UGAGGUGgCACC- -5'
28924 3' -56.3 NC_006146.1 + 79007 0.67 0.8704
Target:  5'- --gCCCACuAGUGCCaACUCCcgacCCGcaagGGg -3'
miRNA:   3'- aaaGGGUG-UCACGG-UGAGGu---GGCa---CC- -5'
28924 3' -56.3 NC_006146.1 + 113667 0.67 0.862957
Target:  5'- ---aCCACGG-GCC-CguggaCCACCGUGGu -3'
miRNA:   3'- aaagGGUGUCaCGGuGa----GGUGGCACC- -5'
28924 3' -56.3 NC_006146.1 + 162013 0.67 0.855307
Target:  5'- --aCCCugGGaGaCCgGCUCCACgGUGGa -3'
miRNA:   3'- aaaGGGugUCaC-GG-UGAGGUGgCACC- -5'
28924 3' -56.3 NC_006146.1 + 47348 0.68 0.831181
Target:  5'- -aUCCUcgGCAcGUGCUACggggCCACCGUcaaGGg -3'
miRNA:   3'- aaAGGG--UGU-CACGGUGa---GGUGGCA---CC- -5'
28924 3' -56.3 NC_006146.1 + 131683 0.68 0.831181
Target:  5'- aUUCCCAgGGUGUCGCgUCCaagGCCGa-- -3'
miRNA:   3'- aAAGGGUgUCACGGUG-AGG---UGGCacc -5'
28924 3' -56.3 NC_006146.1 + 80868 0.68 0.831181
Target:  5'- --cCCCGCGGUGCCA--UCACUG-GGu -3'
miRNA:   3'- aaaGGGUGUCACGGUgaGGUGGCaCC- -5'
28924 3' -56.3 NC_006146.1 + 113115 0.68 0.831181
Target:  5'- -cUCCC-CGGgggaUGCCAUgucuUCCGCCgGUGGg -3'
miRNA:   3'- aaAGGGuGUC----ACGGUG----AGGUGG-CACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.