miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28924 5' -58.8 NC_006146.1 + 51653 0.66 0.834515
Target:  5'- cUCCCAGGGgGCCagggCCgguGCCG-GGAc -3'
miRNA:   3'- -AGGGUCCCaCGGaua-GG---UGGCaCCUc -5'
28924 5' -58.8 NC_006146.1 + 5095 0.66 0.82718
Target:  5'- -gCCAGGGacgccccccuagccgGCCgugCCACCGUGGc- -3'
miRNA:   3'- agGGUCCCa--------------CGGauaGGUGGCACCuc -5'
28924 5' -58.8 NC_006146.1 + 150692 0.66 0.826357
Target:  5'- -gCCAGGGggacggaggGCCUggCCugCG-GGGGa -3'
miRNA:   3'- agGGUCCCa--------CGGAuaGGugGCaCCUC- -5'
28924 5' -58.8 NC_006146.1 + 109884 0.66 0.826357
Target:  5'- gCCCAGGaUGCg-AUCgGCCGUGGc- -3'
miRNA:   3'- aGGGUCCcACGgaUAGgUGGCACCuc -5'
28924 5' -58.8 NC_006146.1 + 135110 0.66 0.826357
Target:  5'- uUCCCAGGGUuuggGUUUGcUCCGgCG-GGGGg -3'
miRNA:   3'- -AGGGUCCCA----CGGAU-AGGUgGCaCCUC- -5'
28924 5' -58.8 NC_006146.1 + 41607 0.66 0.809546
Target:  5'- gCCCGGGGgGCUgGUCCGCUGggcccGGGc -3'
miRNA:   3'- aGGGUCCCaCGGaUAGGUGGCa----CCUc -5'
28924 5' -58.8 NC_006146.1 + 43522 0.66 0.809546
Target:  5'- -gCCAGGcUGCCgg-CCACCaucaGUGGGGu -3'
miRNA:   3'- agGGUCCcACGGauaGGUGG----CACCUC- -5'
28924 5' -58.8 NC_006146.1 + 163452 0.66 0.800907
Target:  5'- aCUCGGGGUGCCcgGUCUugCagguucugaGUGGGu -3'
miRNA:   3'- aGGGUCCCACGGa-UAGGugG---------CACCUc -5'
28924 5' -58.8 NC_006146.1 + 44277 0.67 0.792124
Target:  5'- cCCCGGGGUguGCCcaccgaCCACCGccaaaccgguagUGGGGg -3'
miRNA:   3'- aGGGUCCCA--CGGaua---GGUGGC------------ACCUC- -5'
28924 5' -58.8 NC_006146.1 + 114330 0.67 0.783203
Target:  5'- cCCCAGGc-GCCUGcaucaCCACCcUGGAGu -3'
miRNA:   3'- aGGGUCCcaCGGAUa----GGUGGcACCUC- -5'
28924 5' -58.8 NC_006146.1 + 139457 0.67 0.780502
Target:  5'- gCCCgggGGGGUGCCUGcacuggagaaggucUCCACgGcacccgGGGGg -3'
miRNA:   3'- aGGG---UCCCACGGAU--------------AGGUGgCa-----CCUC- -5'
28924 5' -58.8 NC_006146.1 + 78936 0.67 0.774154
Target:  5'- -gCCAGGccguuUGCUUGUCCuCCGUGGuAGg -3'
miRNA:   3'- agGGUCCc----ACGGAUAGGuGGCACC-UC- -5'
28924 5' -58.8 NC_006146.1 + 131684 0.67 0.774154
Target:  5'- uUCCCAGGGUGUCgcGUCCaagGCCGa---- -3'
miRNA:   3'- -AGGGUCCCACGGa-UAGG---UGGCaccuc -5'
28924 5' -58.8 NC_006146.1 + 34043 0.67 0.755702
Target:  5'- gUCCC-GGG-GCCUAUgCCGgCCG-GGGGu -3'
miRNA:   3'- -AGGGuCCCaCGGAUA-GGU-GGCaCCUC- -5'
28924 5' -58.8 NC_006146.1 + 162013 0.67 0.746316
Target:  5'- aCCCuGGGaGaCCggcUCCACgGUGGAGu -3'
miRNA:   3'- aGGGuCCCaC-GGau-AGGUGgCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 131490 0.68 0.717623
Target:  5'- gUCUGGGGUGCCagggAUCgACCG-GGAa -3'
miRNA:   3'- aGGGUCCCACGGa---UAGgUGGCaCCUc -5'
28924 5' -58.8 NC_006146.1 + 52924 0.68 0.717623
Target:  5'- cCCCGGGGgcgcugGCCUcGUCCGCCGc---- -3'
miRNA:   3'- aGGGUCCCa-----CGGA-UAGGUGGCaccuc -5'
28924 5' -58.8 NC_006146.1 + 44430 0.68 0.707909
Target:  5'- cUCCCGGGGUcuggcacccguGCCauagCCucCCGUGGAa -3'
miRNA:   3'- -AGGGUCCCA-----------CGGaua-GGu-GGCACCUc -5'
28924 5' -58.8 NC_006146.1 + 80356 0.68 0.707909
Target:  5'- cUCCCGGGc--CCUGcUCCACCGcuccgGGAGg -3'
miRNA:   3'- -AGGGUCCcacGGAU-AGGUGGCa----CCUC- -5'
28924 5' -58.8 NC_006146.1 + 33703 0.68 0.697152
Target:  5'- cCCCGGGGUgugcccgGCCUAcCC-CCGUucuGGAGc -3'
miRNA:   3'- aGGGUCCCA-------CGGAUaGGuGGCA---CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.