miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28924 5' -58.8 NC_006146.1 + 8905 1.08 0.002219
Target:  5'- cUCCCAGGGUGCCUAUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUCCCACGGAUAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 9038 0.99 0.008814
Target:  5'- cUCCCAGGGaGCCUAUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUCCCaCGGAUAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 9105 0.99 0.008814
Target:  5'- cUCCCAGGGaGCCUAUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUCCCaCGGAUAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 8972 0.96 0.01511
Target:  5'- cUCCCAGGGUG-CUAUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUCCCACgGAUAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 8873 0.79 0.185828
Target:  5'- uUCCCAcaGUGCCacUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUccCACGGauAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 40959 0.73 0.437874
Target:  5'- cCCCAGGuccGUGCCguagaCCGCCGUGGuGc -3'
miRNA:   3'- aGGGUCC---CACGGaua--GGUGGCACCuC- -5'
28924 5' -58.8 NC_006146.1 + 150785 0.72 0.501633
Target:  5'- cCCCAGcaGGUGCCgggCCACCGUGu-- -3'
miRNA:   3'- aGGGUC--CCACGGauaGGUGGCACcuc -5'
28924 5' -58.8 NC_006146.1 + 42623 0.72 0.473769
Target:  5'- gCCUGGGGcucgGCCg--CCGCCGUGGGc -3'
miRNA:   3'- aGGGUCCCa---CGGauaGGUGGCACCUc -5'
28924 5' -58.8 NC_006146.1 + 137717 0.71 0.559325
Target:  5'- cCCCGGGGUGCCcgggCCuacCCGguucUGGAGc -3'
miRNA:   3'- aGGGUCCCACGGaua-GGu--GGC----ACCUC- -5'
28924 5' -58.8 NC_006146.1 + 78359 0.71 0.520603
Target:  5'- cCCCAGGGUGUag--CCGCUGcccagGGAGg -3'
miRNA:   3'- aGGGUCCCACGgauaGGUGGCa----CCUC- -5'
28924 5' -58.8 NC_006146.1 + 113117 0.71 0.549559
Target:  5'- cCCCGGGGgaUGCCaugucuUCCGCCgGUGGGu -3'
miRNA:   3'- aGGGUCCC--ACGGau----AGGUGG-CACCUc -5'
28924 5' -58.8 NC_006146.1 + 130956 0.7 0.588887
Target:  5'- aCCCGGGGUGCUggcggaacUCCAgaGaUGGAGg -3'
miRNA:   3'- aGGGUCCCACGGau------AGGUggC-ACCUC- -5'
28924 5' -58.8 NC_006146.1 + 16495 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 22651 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 19573 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 25729 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 28807 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 13417 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 80356 0.68 0.707909
Target:  5'- cUCCCGGGc--CCUGcUCCACCGcuccgGGAGg -3'
miRNA:   3'- -AGGGUCCcacGGAU-AGGUGGCa----CCUC- -5'
28924 5' -58.8 NC_006146.1 + 70793 0.68 0.686334
Target:  5'- aCCCGGGaccgcagacuCCUGUCCACCGUccggguGGAGg -3'
miRNA:   3'- aGGGUCCcac-------GGAUAGGUGGCA------CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.