miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28924 5' -58.8 NC_006146.1 + 44277 0.67 0.792124
Target:  5'- cCCCGGGGUguGCCcaccgaCCACCGccaaaccgguagUGGGGg -3'
miRNA:   3'- aGGGUCCCA--CGGaua---GGUGGC------------ACCUC- -5'
28924 5' -58.8 NC_006146.1 + 43522 0.66 0.809546
Target:  5'- -gCCAGGcUGCCgg-CCACCaucaGUGGGGu -3'
miRNA:   3'- agGGUCCcACGGauaGGUGG----CACCUC- -5'
28924 5' -58.8 NC_006146.1 + 42623 0.72 0.473769
Target:  5'- gCCUGGGGcucgGCCg--CCGCCGUGGGc -3'
miRNA:   3'- aGGGUCCCa---CGGauaGGUGGCACCUc -5'
28924 5' -58.8 NC_006146.1 + 41607 0.66 0.809546
Target:  5'- gCCCGGGGgGCUgGUCCGCUGggcccGGGc -3'
miRNA:   3'- aGGGUCCCaCGGaUAGGUGGCa----CCUc -5'
28924 5' -58.8 NC_006146.1 + 40959 0.73 0.437874
Target:  5'- cCCCAGGuccGUGCCguagaCCGCCGUGGuGc -3'
miRNA:   3'- aGGGUCC---CACGGaua--GGUGGCACCuC- -5'
28924 5' -58.8 NC_006146.1 + 34043 0.67 0.755702
Target:  5'- gUCCC-GGG-GCCUAUgCCGgCCG-GGGGu -3'
miRNA:   3'- -AGGGuCCCaCGGAUA-GGU-GGCaCCUC- -5'
28924 5' -58.8 NC_006146.1 + 33890 0.68 0.697152
Target:  5'- cCCCGGGGUgugcccgGCCUAcCC-CCGUccuGGAGc -3'
miRNA:   3'- aGGGUCCCA-------CGGAUaGGuGGCA---CCUC- -5'
28924 5' -58.8 NC_006146.1 + 33703 0.68 0.697152
Target:  5'- cCCCGGGGUgugcccgGCCUAcCC-CCGUucuGGAGc -3'
miRNA:   3'- aGGGUCCCA-------CGGAUaGGuGGCA---CCUC- -5'
28924 5' -58.8 NC_006146.1 + 28807 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 25729 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 22651 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 19573 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 16495 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 13417 0.7 0.597816
Target:  5'- cCUCAGGGUGCCUccccggGUCCcaggccaGCCGgagGGAc -3'
miRNA:   3'- aGGGUCCCACGGA------UAGG-------UGGCa--CCUc -5'
28924 5' -58.8 NC_006146.1 + 9105 0.99 0.008814
Target:  5'- cUCCCAGGGaGCCUAUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUCCCaCGGAUAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 9038 0.99 0.008814
Target:  5'- cUCCCAGGGaGCCUAUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUCCCaCGGAUAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 8972 0.96 0.01511
Target:  5'- cUCCCAGGGUG-CUAUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUCCCACgGAUAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 8905 1.08 0.002219
Target:  5'- cUCCCAGGGUGCCUAUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUCCCACGGAUAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 8873 0.79 0.185828
Target:  5'- uUCCCAcaGUGCCacUCCACCGUGGAGc -3'
miRNA:   3'- -AGGGUccCACGGauAGGUGGCACCUC- -5'
28924 5' -58.8 NC_006146.1 + 5095 0.66 0.82718
Target:  5'- -gCCAGGGacgccccccuagccgGCCgugCCACCGUGGc- -3'
miRNA:   3'- agGGUCCCa--------------CGGauaGGUGGCACCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.