miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 151117 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 154195 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 157273 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 126669 0.66 0.648101
Target:  5'- aCCGCCGcccggccagaGGaGACGGUcaccaaggcaccgCCCCCGGcUGCa -3'
miRNA:   3'- gGGUGGCa---------CC-CUGCCG-------------GGGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 139233 0.66 0.649055
Target:  5'- gCUGCUGUGGGGCuuguuggagaGGagaaCCCUCAGgUGCa -3'
miRNA:   3'- gGGUGGCACCCUG----------CCg---GGGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 100967 0.66 0.658587
Target:  5'- gCCAgCGcGGGGCGGCUcaCCCUGGUc- -3'
miRNA:   3'- gGGUgGCaCCCUGCCGG--GGGGUCAcg -5'
28925 3' -63.4 NC_006146.1 + 161450 0.66 0.658587
Target:  5'- aCCCAaggcgCGUGGGGCGGgUaggCUGGUGCg -3'
miRNA:   3'- -GGGUg----GCACCCUGCCgGgg-GGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 16923 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 20000 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 53097 0.67 0.553201
Target:  5'- cCCCuCCGUcuaguccGGaGGCGGCCCggCCCGGgggaGCg -3'
miRNA:   3'- -GGGuGGCA-------CC-CUGCCGGG--GGGUCa---CG- -5'
28925 3' -63.4 NC_006146.1 + 64227 0.67 0.554136
Target:  5'- cCCCAgggaucCCGUGcccggggagaGGACGGCCCUgaCCAGccgGCc -3'
miRNA:   3'- -GGGU------GGCAC----------CCUGCCGGGG--GGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 93604 0.67 0.554136
Target:  5'- aCCCGCCGggcuccUGGGGCuGCUguccuCCCCGGagGCc -3'
miRNA:   3'- -GGGUGGC------ACCCUGcCGG-----GGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 13845 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 170167 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 66865 0.67 0.563506
Target:  5'- cCCCAgCGUccaGGGC-GCCCCCCGG-GUc -3'
miRNA:   3'- -GGGUgGCAc--CCUGcCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 169236 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 168304 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 31424 0.67 0.581421
Target:  5'- cCCCggguGCCGUGGaGACcuucuccagugcaGGCaccCCCCCGG-GCa -3'
miRNA:   3'- -GGG----UGGCACC-CUG-------------CCG---GGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 128264 0.67 0.572918
Target:  5'- gCCCACuaCGUGaGGcccacggcgGCGGCCgagCCCCAG-GCu -3'
miRNA:   3'- -GGGUG--GCAC-CC---------UGCCGG---GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 146875 0.67 0.554136
Target:  5'- cCCCGCCaggGGGACGacGCCUCgCCGGUc- -3'
miRNA:   3'- -GGGUGGca-CCCUGC--CGGGG-GGUCAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.