miRNA display CGI


Results 121 - 140 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 33837 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 33744 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 33651 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 34859 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 35044 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 161979 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 91284 0.7 0.438084
Target:  5'- aCCCuguCCccGGGACGaGCUCaCCGGUGCg -3'
miRNA:   3'- -GGGu--GGcaCCCUGC-CGGGgGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 36150 0.7 0.437244
Target:  5'- uCCCACUcUGGGACgagcguuGGCCUggcuggCCUGGUGCa -3'
miRNA:   3'- -GGGUGGcACCCUG-------CCGGG------GGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 142579 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 145657 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 148734 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 151812 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 154890 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 157968 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 115081 0.7 0.389378
Target:  5'- gCCCACCcaggccGGGACGGCCucuuccaccgCCCCgAGUcGCu -3'
miRNA:   3'- -GGGUGGca----CCCUGCCGG----------GGGG-UCA-CG- -5'
28925 3' -63.4 NC_006146.1 + 161778 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 161845 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 161912 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 54131 0.7 0.413289
Target:  5'- gCagguCCGUGGaGuaguaGCGGCCCCCC-GUGCc -3'
miRNA:   3'- gGgu--GGCACC-C-----UGCCGGGGGGuCACG- -5'
28925 3' -63.4 NC_006146.1 + 42419 0.7 0.413289
Target:  5'- gCCCGCCGUGGGcccccUGGCCUacaAGUGUu -3'
miRNA:   3'- -GGGUGGCACCCu----GCCGGGgggUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.