miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 115903 0.71 0.344356
Target:  5'- uCCCGCCcggGGGGCuuccGGCCaCCCCGGguacggggGCa -3'
miRNA:   3'- -GGGUGGca-CCCUG----CCGG-GGGGUCa-------CG- -5'
28925 3' -63.4 NC_006146.1 + 57281 0.71 0.366391
Target:  5'- -gCACCGUcaagcuGACGGUCCCCCAGgagGCc -3'
miRNA:   3'- ggGUGGCAcc----CUGCCGGGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 151812 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 157968 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 145657 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 91284 0.7 0.438084
Target:  5'- aCCCuguCCccGGGACGaGCUCaCCGGUGCg -3'
miRNA:   3'- -GGGu--GGcaCCCUGC-CGGGgGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 3479 0.7 0.421458
Target:  5'- cCCCGCCccGGGACcccgcgcuGGCCCCCgcCAG-GCc -3'
miRNA:   3'- -GGGUGGcaCCCUG--------CCGGGGG--GUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 2547 0.7 0.421458
Target:  5'- cCCCGCCccGGGACcccgcgcuGGCCCCCgcCAG-GCc -3'
miRNA:   3'- -GGGUGGcaCCCUG--------CCGGGGG--GUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 1615 0.7 0.421458
Target:  5'- cCCCGCCccGGGACcccgcgcuGGCCCCCgcCAG-GCc -3'
miRNA:   3'- -GGGUGGcaCCCUG--------CCGGGGG--GUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 684 0.7 0.421458
Target:  5'- cCCCGCCccGGGACcccgcgcuGGCCCCCgcCAG-GCc -3'
miRNA:   3'- -GGGUGGcaCCCUG--------CCGGGGG--GUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 168269 0.7 0.397247
Target:  5'- cCCCGCCGUGuGGACGaaGCCgugCUCCAGacUGUg -3'
miRNA:   3'- -GGGUGGCAC-CCUGC--CGG---GGGGUC--ACG- -5'
28925 3' -63.4 NC_006146.1 + 148734 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 154890 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 142579 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 115719 0.7 0.397247
Target:  5'- gCCCGCCGcggccgcagccUGGGACGcggucaCCCCCCuGcGCa -3'
miRNA:   3'- -GGGUGGC-----------ACCCUGCc-----GGGGGGuCaCG- -5'
28925 3' -63.4 NC_006146.1 + 161778 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 115081 0.7 0.389378
Target:  5'- gCCCACCcaggccGGGACGGCCucuuccaccgCCCCgAGUcGCu -3'
miRNA:   3'- -GGGUGGca----CCCUGCCGG----------GGGG-UCA-CG- -5'
28925 3' -63.4 NC_006146.1 + 40426 0.7 0.420637
Target:  5'- gCCACCc-GGGGCGGCagcggCCCCguaggcgGGUGCg -3'
miRNA:   3'- gGGUGGcaCCCUGCCGg----GGGG-------UCACG- -5'
28925 3' -63.4 NC_006146.1 + 161845 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 139424 0.7 0.421458
Target:  5'- gCCUGCUGUuuaguaGGaGAaGGCCCCCaCGGUGCc -3'
miRNA:   3'- -GGGUGGCA------CC-CUgCCGGGGG-GUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.