miRNA display CGI


Results 101 - 120 of 171 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 16923 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 13381 0.67 0.590898
Target:  5'- aCCACCGUGGucugcGCGGCCacggacugCCUCAGccaggucUGCa -3'
miRNA:   3'- gGGUGGCACCc----UGCCGG--------GGGGUC-------ACG- -5'
28925 3' -63.4 NC_006146.1 + 119169 0.67 0.582367
Target:  5'- gCCCACCucGGGGCGccGCCuCCCCA-UGUc -3'
miRNA:   3'- -GGGUGGcaCCCUGC--CGG-GGGGUcACG- -5'
28925 3' -63.4 NC_006146.1 + 52244 0.67 0.591847
Target:  5'- cCCCACCauugcucaUGGaGACGGCCggagaCCCAGcaaGCa -3'
miRNA:   3'- -GGGUGGc-------ACC-CUGCCGGg----GGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 115195 0.67 0.601352
Target:  5'- gCCAgCG-GcGGGCaGaGCCCCCCGGcgGCg -3'
miRNA:   3'- gGGUgGCaC-CCUG-C-CGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 42638 0.67 0.610878
Target:  5'- gCCGCCGUGGgccucacguaGugGGCCCagaGGUaGCg -3'
miRNA:   3'- gGGUGGCACC----------CugCCGGGgggUCA-CG- -5'
28925 3' -63.4 NC_006146.1 + 64379 0.67 0.614692
Target:  5'- gCCCACCaG-GGGAUGcGCCCaCCUGucugacuuggcccccGUGCa -3'
miRNA:   3'- -GGGUGG-CaCCCUGC-CGGG-GGGU---------------CACG- -5'
28925 3' -63.4 NC_006146.1 + 137552 0.67 0.582367
Target:  5'- aCCCACCG-GcGGccaccCGGCUgCCCCGGaGCa -3'
miRNA:   3'- -GGGUGGCaC-CCu----GCCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 127102 0.67 0.582367
Target:  5'- --aGCgGUGGGACaGGCaCgCCCAGaUGCu -3'
miRNA:   3'- gggUGgCACCCUG-CCG-GgGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 26156 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 23078 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 13845 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 118975 0.67 0.563506
Target:  5'- aCCgCACCG-GGG-CcGCCCgUCGGUGCc -3'
miRNA:   3'- -GG-GUGGCaCCCuGcCGGGgGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 53097 0.67 0.553201
Target:  5'- cCCCuCCGUcuaguccGGaGGCGGCCCggCCCGGgggaGCg -3'
miRNA:   3'- -GGGuGGCA-------CC-CUGCCGGG--GGGUCa---CG- -5'
28925 3' -63.4 NC_006146.1 + 93604 0.67 0.554136
Target:  5'- aCCCGCCGggcuccUGGGGCuGCUguccuCCCCGGagGCc -3'
miRNA:   3'- -GGGUGGC------ACCCUGcCGG-----GGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 167372 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 146875 0.67 0.554136
Target:  5'- cCCCGCCaggGGGACGacGCCUCgCCGGUc- -3'
miRNA:   3'- -GGGUGGca-CCCUGC--CGGGG-GGUCAcg -5'
28925 3' -63.4 NC_006146.1 + 66865 0.67 0.563506
Target:  5'- cCCCAgCGUccaGGGC-GCCCCCCGG-GUc -3'
miRNA:   3'- -GGGUgGCAc--CCUGcCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 31424 0.67 0.581421
Target:  5'- cCCCggguGCCGUGGaGACcuucuccagugcaGGCaccCCCCCGG-GCa -3'
miRNA:   3'- -GGG----UGGCACC-CUG-------------CCG---GGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 64227 0.67 0.554136
Target:  5'- cCCCAgggaucCCGUGcccggggagaGGACGGCCCUgaCCAGccgGCc -3'
miRNA:   3'- -GGGU------GGCAC----------CCUGCCGGGG--GGUCa--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.