miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 42374 0.68 0.517166
Target:  5'- gCCGCCaggGUGGGcgaGgGGCgCCCCAGgGCc -3'
miRNA:   3'- gGGUGG---CACCC---UgCCGgGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 57177 0.68 0.517166
Target:  5'- cCUCACCcca-GugGGCCCCCUGGUGg -3'
miRNA:   3'- -GGGUGGcaccCugCCGGGGGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 136792 0.68 0.520822
Target:  5'- uCCC-CCGUgaacGGGGCGcgcugggucgcggcuGCCCCCCGGgacccccgGCc -3'
miRNA:   3'- -GGGuGGCA----CCCUGC---------------CGGGGGGUCa-------CG- -5'
28925 3' -63.4 NC_006146.1 + 52903 0.68 0.526323
Target:  5'- cCCCGCa-UGGucugcgUGGCCCCCCGGggGCg -3'
miRNA:   3'- -GGGUGgcACCcu----GCCGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 167160 0.68 0.530002
Target:  5'- aCCCACCccGGGcugaagggccacGCGGCCCCCagagacccugucuGUGUg -3'
miRNA:   3'- -GGGUGGcaCCC------------UGCCGGGGGgu-----------CACG- -5'
28925 3' -63.4 NC_006146.1 + 130661 0.68 0.535539
Target:  5'- uCCCACCcgagGUcGGACuacaucccgGGCCCCUCGcGUGCc -3'
miRNA:   3'- -GGGUGG----CAcCCUG---------CCGGGGGGU-CACG- -5'
28925 3' -63.4 NC_006146.1 + 57383 0.68 0.544812
Target:  5'- -gCGCCgGUGGGcUGGCCCCgCGaccGUGCc -3'
miRNA:   3'- ggGUGG-CACCCuGCCGGGGgGU---CACG- -5'
28925 3' -63.4 NC_006146.1 + 21691 0.68 0.544812
Target:  5'- aCUGCUGcagGGGGCGGCCaacauCCUgCAGUGCc -3'
miRNA:   3'- gGGUGGCa--CCCUGCCGG-----GGG-GUCACG- -5'
28925 3' -63.4 NC_006146.1 + 8855 0.68 0.544812
Target:  5'- cCCCGCgGUGGaacCGGuUUCCCaCAGUGCc -3'
miRNA:   3'- -GGGUGgCACCcu-GCC-GGGGG-GUCACG- -5'
28925 3' -63.4 NC_006146.1 + 53097 0.67 0.553201
Target:  5'- cCCCuCCGUcuaguccGGaGGCGGCCCggCCCGGgggaGCg -3'
miRNA:   3'- -GGGuGGCA-------CC-CUGCCGGG--GGGUCa---CG- -5'
28925 3' -63.4 NC_006146.1 + 146875 0.67 0.554136
Target:  5'- cCCCGCCaggGGGACGacGCCUCgCCGGUc- -3'
miRNA:   3'- -GGGUGGca-CCCUGC--CGGGG-GGUCAcg -5'
28925 3' -63.4 NC_006146.1 + 168304 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 93604 0.67 0.554136
Target:  5'- aCCCGCCGggcuccUGGGGCuGCUguccuCCCCGGagGCc -3'
miRNA:   3'- -GGGUGGC------ACCCUGcCGG-----GGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 167372 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 169236 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 64227 0.67 0.554136
Target:  5'- cCCCAgggaucCCGUGcccggggagaGGACGGCCCUgaCCAGccgGCc -3'
miRNA:   3'- -GGGU------GGCAC----------CCUGCCGGGG--GGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 170167 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 66865 0.67 0.563506
Target:  5'- cCCCAgCGUccaGGGC-GCCCCCCGG-GUc -3'
miRNA:   3'- -GGGUgGCAc--CCUGcCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 118975 0.67 0.563506
Target:  5'- aCCgCACCG-GGG-CcGCCCgUCGGUGCc -3'
miRNA:   3'- -GG-GUGGCaCCCuGcCGGGgGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 31755 0.67 0.563506
Target:  5'- cCCCcCCGgGGGACGGgagCCCCCGuucgGCc -3'
miRNA:   3'- -GGGuGGCaCCCUGCCg--GGGGGUca--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.