miRNA display CGI


Results 101 - 120 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 116232 0.67 0.572918
Target:  5'- gCCACCGUcuGGGaggucuacgacGgGGCCCCuCCAaUGCc -3'
miRNA:   3'- gGGUGGCA--CCC-----------UgCCGGGG-GGUcACG- -5'
28925 3' -63.4 NC_006146.1 + 104434 0.67 0.572918
Target:  5'- aCCUACaagGUggacaGGGGCGGCgCCCUCGGcagGCa -3'
miRNA:   3'- -GGGUGg--CA-----CCCUGCCG-GGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 125937 0.67 0.572918
Target:  5'- gCCACCGcGGu-CGaGUCCCCCGGgGCc -3'
miRNA:   3'- gGGUGGCaCCcuGC-CGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 128264 0.67 0.572918
Target:  5'- gCCCACuaCGUGaGGcccacggcgGCGGCCgagCCCCAG-GCu -3'
miRNA:   3'- -GGGUG--GCAC-CC---------UGCCGG---GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 12763 0.67 0.581421
Target:  5'- gCCCACCuGUGaccugccggaccuGGacGCGGCCCUgCAGggGCg -3'
miRNA:   3'- -GGGUGG-CAC-------------CC--UGCCGGGGgGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 31424 0.67 0.581421
Target:  5'- cCCCggguGCCGUGGaGACcuucuccagugcaGGCaccCCCCCGG-GCa -3'
miRNA:   3'- -GGG----UGGCACC-CUG-------------CCG---GGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 29234 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 26156 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 20000 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 23078 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 119169 0.67 0.582367
Target:  5'- gCCCACCucGGGGCGccGCCuCCCCA-UGUc -3'
miRNA:   3'- -GGGUGGcaCCCUGC--CGG-GGGGUcACG- -5'
28925 3' -63.4 NC_006146.1 + 137552 0.67 0.582367
Target:  5'- aCCCACCG-GcGGccaccCGGCUgCCCCGGaGCa -3'
miRNA:   3'- -GGGUGGCaC-CCu----GCCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 16923 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 13845 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 127102 0.67 0.582367
Target:  5'- --aGCgGUGGGACaGGCaCgCCCAGaUGCu -3'
miRNA:   3'- gggUGgCACCCUG-CCG-GgGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 13381 0.67 0.590898
Target:  5'- aCCACCGUGGucugcGCGGCCacggacugCCUCAGccaggucUGCa -3'
miRNA:   3'- gGGUGGCACCc----UGCCGG--------GGGGUC-------ACG- -5'
28925 3' -63.4 NC_006146.1 + 69802 0.67 0.591847
Target:  5'- gCCCA-CGUGGGACgugaugGGCCgCgaAGUGCu -3'
miRNA:   3'- -GGGUgGCACCCUG------CCGGgGggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 52244 0.67 0.591847
Target:  5'- cCCCACCauugcucaUGGaGACGGCCggagaCCCAGcaaGCa -3'
miRNA:   3'- -GGGUGGc-------ACC-CUGCCGGg----GGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 56804 0.67 0.591847
Target:  5'- gCgGCCGUcuggcgggcGGGGCuucuGGCCCCCgAG-GCg -3'
miRNA:   3'- gGgUGGCA---------CCCUG----CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 115195 0.67 0.601352
Target:  5'- gCCAgCG-GcGGGCaGaGCCCCCCGGcgGCg -3'
miRNA:   3'- gGGUgGCaC-CCUG-C-CGGGGGGUCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.