Results 81 - 100 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 64227 | 0.67 | 0.554136 |
Target: 5'- cCCCAgggaucCCGUGcccggggagaGGACGGCCCUgaCCAGccgGCc -3' miRNA: 3'- -GGGU------GGCAC----------CCUGCCGGGG--GGUCa--CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 53097 | 0.67 | 0.553201 |
Target: 5'- cCCCuCCGUcuaguccGGaGGCGGCCCggCCCGGgggaGCg -3' miRNA: 3'- -GGGuGGCA-------CC-CUGCCGGG--GGGUCa---CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 57383 | 0.68 | 0.544812 |
Target: 5'- -gCGCCgGUGGGcUGGCCCCgCGaccGUGCc -3' miRNA: 3'- ggGUGG-CACCCuGCCGGGGgGU---CACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 8855 | 0.68 | 0.544812 |
Target: 5'- cCCCGCgGUGGaacCGGuUUCCCaCAGUGCc -3' miRNA: 3'- -GGGUGgCACCcu-GCC-GGGGG-GUCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 21691 | 0.68 | 0.544812 |
Target: 5'- aCUGCUGcagGGGGCGGCCaacauCCUgCAGUGCc -3' miRNA: 3'- gGGUGGCa--CCCUGCCGG-----GGG-GUCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 130661 | 0.68 | 0.535539 |
Target: 5'- uCCCACCcgagGUcGGACuacaucccgGGCCCCUCGcGUGCc -3' miRNA: 3'- -GGGUGG----CAcCCUG---------CCGGGGGGU-CACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 167160 | 0.68 | 0.530002 |
Target: 5'- aCCCACCccGGGcugaagggccacGCGGCCCCCagagacccugucuGUGUg -3' miRNA: 3'- -GGGUGGcaCCC------------UGCCGGGGGgu-----------CACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 52903 | 0.68 | 0.526323 |
Target: 5'- cCCCGCa-UGGucugcgUGGCCCCCCGGggGCg -3' miRNA: 3'- -GGGUGgcACCcu----GCCGGGGGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 136792 | 0.68 | 0.520822 |
Target: 5'- uCCC-CCGUgaacGGGGCGcgcugggucgcggcuGCCCCCCGGgacccccgGCc -3' miRNA: 3'- -GGGuGGCA----CCCUGC---------------CGGGGGGUCa-------CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 42374 | 0.68 | 0.517166 |
Target: 5'- gCCGCCaggGUGGGcgaGgGGCgCCCCAGgGCc -3' miRNA: 3'- gGGUGG---CACCC---UgCCGgGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 57177 | 0.68 | 0.517166 |
Target: 5'- cCUCACCcca-GugGGCCCCCUGGUGg -3' miRNA: 3'- -GGGUGGcaccCugCCGGGGGGUCACg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 54567 | 0.68 | 0.508074 |
Target: 5'- cCCCACCGUGGGcaugaucaGGgaCCUCuGUGCc -3' miRNA: 3'- -GGGUGGCACCCug------CCggGGGGuCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 57778 | 0.68 | 0.499051 |
Target: 5'- aCCCACCG-GcGGAagacaUGGCauCCCCCGGggaGCg -3' miRNA: 3'- -GGGUGGCaC-CCU-----GCCG--GGGGGUCa--CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 34951 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 34859 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35416 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35323 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35230 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35137 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35044 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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