miRNA display CGI


Results 61 - 80 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 35602 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 35695 0.69 0.490099
Target:  5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3'
miRNA:   3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 36150 0.7 0.437244
Target:  5'- uCCCACUcUGGGACgagcguuGGCCUggcuggCCUGGUGCa -3'
miRNA:   3'- -GGGUGGcACCCUG-------CCGGG------GGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 40426 0.7 0.420637
Target:  5'- gCCACCc-GGGGCGGCagcggCCCCguaggcgGGUGCg -3'
miRNA:   3'- gGGUGGcaCCCUGCCGg----GGGG-------UCACG- -5'
28925 3' -63.4 NC_006146.1 + 40978 0.74 0.232466
Target:  5'- aCCGCCGUGGuGccgcgcCGGCgCCCCAGgGCg -3'
miRNA:   3'- gGGUGGCACC-Cu-----GCCGgGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 42374 0.68 0.517166
Target:  5'- gCCGCCaggGUGGGcgaGgGGCgCCCCAGgGCc -3'
miRNA:   3'- gGGUGG---CACCC---UgCCGgGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 42419 0.7 0.413289
Target:  5'- gCCCGCCGUGGGcccccUGGCCUacaAGUGUu -3'
miRNA:   3'- -GGGUGGCACCCu----GCCGGGgggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 42638 0.67 0.610878
Target:  5'- gCCGCCGUGGgccucacguaGugGGCCCagaGGUaGCg -3'
miRNA:   3'- gGGUGGCACC----------CugCCGGGgggUCA-CG- -5'
28925 3' -63.4 NC_006146.1 + 42677 0.73 0.277319
Target:  5'- gCCCGCgGUGGGcugccugaggcugGCaGaGCCCCCCAGcGCc -3'
miRNA:   3'- -GGGUGgCACCC-------------UG-C-CGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 44821 0.66 0.620417
Target:  5'- aCCuCUGUagGGGGcCGGCgCCCCUcGUGCc -3'
miRNA:   3'- gGGuGGCA--CCCU-GCCG-GGGGGuCACG- -5'
28925 3' -63.4 NC_006146.1 + 45017 0.73 0.258943
Target:  5'- cCCCACCGUcccucgagagugaGGGAgagaggccggggcCGGCUCCCUAGggGCg -3'
miRNA:   3'- -GGGUGGCA-------------CCCU-------------GCCGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 45522 0.66 0.658587
Target:  5'- gCCACgGUGGGGgccugGGCCUCCUuggGCu -3'
miRNA:   3'- gGGUGgCACCCUg----CCGGGGGGucaCG- -5'
28925 3' -63.4 NC_006146.1 + 49874 0.66 0.6681
Target:  5'- aUCACCGUcGGGAggcuggGGUCCUCCGGUa- -3'
miRNA:   3'- gGGUGGCA-CCCUg-----CCGGGGGGUCAcg -5'
28925 3' -63.4 NC_006146.1 + 51926 0.71 0.344356
Target:  5'- -gCACCGacGGGCGGCCCC--GGUGCg -3'
miRNA:   3'- ggGUGGCacCCUGCCGGGGggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 52244 0.67 0.591847
Target:  5'- cCCCACCauugcucaUGGaGACGGCCggagaCCCAGcaaGCa -3'
miRNA:   3'- -GGGUGGc-------ACC-CUGCCGGg----GGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 52903 0.68 0.526323
Target:  5'- cCCCGCa-UGGucugcgUGGCCCCCCGGggGCg -3'
miRNA:   3'- -GGGUGgcACCcu----GCCGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 53097 0.67 0.553201
Target:  5'- cCCCuCCGUcuaguccGGaGGCGGCCCggCCCGGgggaGCg -3'
miRNA:   3'- -GGGuGGCA-------CC-CUGCCGGG--GGGUCa---CG- -5'
28925 3' -63.4 NC_006146.1 + 54131 0.7 0.413289
Target:  5'- gCagguCCGUGGaGuaguaGCGGCCCCCC-GUGCc -3'
miRNA:   3'- gGgu--GGCACC-C-----UGCCGGGGGGuCACG- -5'
28925 3' -63.4 NC_006146.1 + 54567 0.68 0.508074
Target:  5'- cCCCACCGUGGGcaugaucaGGgaCCUCuGUGCc -3'
miRNA:   3'- -GGGUGGCACCCug------CCggGGGGuCACG- -5'
28925 3' -63.4 NC_006146.1 + 54986 0.71 0.358939
Target:  5'- cCCCGuacCCG-GGGugGccggaaGCCCCCCGG-GCg -3'
miRNA:   3'- -GGGU---GGCaCCCugC------CGGGGGGUCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.