miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 55934 0.69 0.481223
Target:  5'- gCgGCCGUGGGcugcuGCGuGCCCCCCGc--- -3'
miRNA:   3'- gGgUGGCACCC-----UGC-CGGGGGGUcacg -5'
28925 3' -63.4 NC_006146.1 + 56639 0.66 0.619462
Target:  5'- uCCUAUC-UGGGGCaccacuacgagcuGGCCCUCCcugaGGUGCc -3'
miRNA:   3'- -GGGUGGcACCCUG-------------CCGGGGGG----UCACG- -5'
28925 3' -63.4 NC_006146.1 + 56804 0.67 0.591847
Target:  5'- gCgGCCGUcuggcgggcGGGGCuucuGGCCCCCgAG-GCg -3'
miRNA:   3'- gGgUGGCA---------CCCUG----CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 57177 0.68 0.517166
Target:  5'- cCUCACCcca-GugGGCCCCCUGGUGg -3'
miRNA:   3'- -GGGUGGcaccCugCCGGGGGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 57281 0.71 0.366391
Target:  5'- -gCACCGUcaagcuGACGGUCCCCCAGgagGCc -3'
miRNA:   3'- ggGUGGCAcc----CUGCCGGGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 57383 0.68 0.544812
Target:  5'- -gCGCCgGUGGGcUGGCCCCgCGaccGUGCc -3'
miRNA:   3'- ggGUGG-CACCCuGCCGGGGgGU---CACG- -5'
28925 3' -63.4 NC_006146.1 + 57778 0.68 0.499051
Target:  5'- aCCCACCG-GcGGAagacaUGGCauCCCCCGGggaGCg -3'
miRNA:   3'- -GGGUGGCaC-CCU-----GCCG--GGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 59155 0.73 0.296721
Target:  5'- gCCCGCCucaGGGAC-GCCaCCCAGUGUg -3'
miRNA:   3'- -GGGUGGca-CCCUGcCGGgGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 64227 0.67 0.554136
Target:  5'- cCCCAgggaucCCGUGcccggggagaGGACGGCCCUgaCCAGccgGCc -3'
miRNA:   3'- -GGGU------GGCAC----------CCUGCCGGGG--GGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 64379 0.67 0.614692
Target:  5'- gCCCACCaG-GGGAUGcGCCCaCCUGucugacuuggcccccGUGCa -3'
miRNA:   3'- -GGGUGG-CaCCCUGC-CGGG-GGGU---------------CACG- -5'
28925 3' -63.4 NC_006146.1 + 66865 0.67 0.563506
Target:  5'- cCCCAgCGUccaGGGC-GCCCCCCGG-GUc -3'
miRNA:   3'- -GGGUgGCAc--CCUGcCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 67927 0.74 0.256646
Target:  5'- gCCCACCGUGgaguaugucccggauGGGCGGCugCCCUCGGaggGCg -3'
miRNA:   3'- -GGGUGGCAC---------------CCUGCCG--GGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 69052 0.66 0.639512
Target:  5'- gCCAcCCGUGGuGCGGCagCCCgAGcGCu -3'
miRNA:   3'- gGGU-GGCACCcUGCCGg-GGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 69802 0.67 0.591847
Target:  5'- gCCCA-CGUGGGACgugaugGGCCgCgaAGUGCu -3'
miRNA:   3'- -GGGUgGCACCCUG------CCGGgGggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 83665 0.67 0.601352
Target:  5'- cUCCACCuuUGGGuuGGCCaCCCAGgugaugGCu -3'
miRNA:   3'- -GGGUGGc-ACCCugCCGGgGGGUCa-----CG- -5'
28925 3' -63.4 NC_006146.1 + 86513 0.66 0.649055
Target:  5'- gCCUACCGgaGGccauGAUGGCCgCCCGGUccacGCc -3'
miRNA:   3'- -GGGUGGCa-CC----CUGCCGGgGGGUCA----CG- -5'
28925 3' -63.4 NC_006146.1 + 91284 0.7 0.438084
Target:  5'- aCCCuguCCccGGGACGaGCUCaCCGGUGCg -3'
miRNA:   3'- -GGGu--GGcaCCCUGC-CGGGgGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 92079 0.69 0.490099
Target:  5'- gCUGCUGgGGGGCGGCCCggCCUGGgGCu -3'
miRNA:   3'- gGGUGGCaCCCUGCCGGG--GGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 93604 0.67 0.554136
Target:  5'- aCCCGCCGggcuccUGGGGCuGCUguccuCCCCGGagGCc -3'
miRNA:   3'- -GGGUGGC------ACCCUGcCGG-----GGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 96143 0.66 0.639512
Target:  5'- uUCCugCGUcu--UGGCCCCCCGGagGCu -3'
miRNA:   3'- -GGGugGCAcccuGCCGGGGGGUCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.