miRNA display CGI


Results 101 - 120 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 99030 0.71 0.366391
Target:  5'- aCgGCCGUGuagaGGCCCCCCAGgGCc -3'
miRNA:   3'- gGgUGGCACccugCCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 100967 0.66 0.658587
Target:  5'- gCCAgCGcGGGGCGGCUcaCCCUGGUc- -3'
miRNA:   3'- gGGUgGCaCCCUGCCGG--GGGGUCAcg -5'
28925 3' -63.4 NC_006146.1 + 103539 0.66 0.6681
Target:  5'- cCCCGuacUCGUGGGAccCGGaCCCCgAGgauggGCu -3'
miRNA:   3'- -GGGU---GGCACCCU--GCCgGGGGgUCa----CG- -5'
28925 3' -63.4 NC_006146.1 + 104434 0.67 0.572918
Target:  5'- aCCUACaagGUggacaGGGGCGGCgCCCUCGGcagGCa -3'
miRNA:   3'- -GGGUGg--CA-----CCCUGCCG-GGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 108921 0.66 0.6681
Target:  5'- aCCGagcaggugaCGUGGGccucaACGGCCCCCguGUc- -3'
miRNA:   3'- gGGUg--------GCACCC-----UGCCGGGGGguCAcg -5'
28925 3' -63.4 NC_006146.1 + 110409 0.75 0.217102
Target:  5'- cCUCGCCGUcggGGGAgcUGGCCCCCCGGc-- -3'
miRNA:   3'- -GGGUGGCA---CCCU--GCCGGGGGGUCacg -5'
28925 3' -63.4 NC_006146.1 + 114649 0.73 0.260098
Target:  5'- cCCCGCCGa-GGACGGCCCCgCCuccGCc -3'
miRNA:   3'- -GGGUGGCacCCUGCCGGGG-GGucaCG- -5'
28925 3' -63.4 NC_006146.1 + 115081 0.7 0.389378
Target:  5'- gCCCACCcaggccGGGACGGCCucuuccaccgCCCCgAGUcGCu -3'
miRNA:   3'- -GGGUGGca----CCCUGCCGG----------GGGG-UCA-CG- -5'
28925 3' -63.4 NC_006146.1 + 115195 0.67 0.601352
Target:  5'- gCCAgCG-GcGGGCaGaGCCCCCCGGcgGCg -3'
miRNA:   3'- gGGUgGCaC-CCUG-C-CGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 115719 0.7 0.397247
Target:  5'- gCCCGCCGcggccgcagccUGGGACGcggucaCCCCCCuGcGCa -3'
miRNA:   3'- -GGGUGGC-----------ACCCUGCc-----GGGGGGuCaCG- -5'
28925 3' -63.4 NC_006146.1 + 115834 0.69 0.45508
Target:  5'- cCCUGCUGUGGGuccgauACGGCCgCCUguG-GCa -3'
miRNA:   3'- -GGGUGGCACCC------UGCCGG-GGGguCaCG- -5'
28925 3' -63.4 NC_006146.1 + 115845 0.66 0.649055
Target:  5'- aCCACCGUc--AUGGCCaCCCCGGgGUg -3'
miRNA:   3'- gGGUGGCAcccUGCCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 115903 0.71 0.344356
Target:  5'- uCCCGCCcggGGGGCuuccGGCCaCCCCGGguacggggGCa -3'
miRNA:   3'- -GGGUGGca-CCCUG----CCGG-GGGGUCa-------CG- -5'
28925 3' -63.4 NC_006146.1 + 116232 0.67 0.572918
Target:  5'- gCCACCGUcuGGGaggucuacgacGgGGCCCCuCCAaUGCc -3'
miRNA:   3'- gGGUGGCA--CCC-----------UgCCGGGG-GGUcACG- -5'
28925 3' -63.4 NC_006146.1 + 118553 0.66 0.6681
Target:  5'- cCCCACUGccaaaaGGAC-GCCgCCCCGG-GCa -3'
miRNA:   3'- -GGGUGGCac----CCUGcCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 118975 0.67 0.563506
Target:  5'- aCCgCACCG-GGG-CcGCCCgUCGGUGCc -3'
miRNA:   3'- -GG-GUGGCaCCCuGcCGGGgGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 119169 0.67 0.582367
Target:  5'- gCCCACCucGGGGCGccGCCuCCCCA-UGUc -3'
miRNA:   3'- -GGGUGGcaCCCUGC--CGG-GGGGUcACG- -5'
28925 3' -63.4 NC_006146.1 + 120888 0.66 0.658587
Target:  5'- cCCCuuCUGcuucGGugGuGCCCCCCuucGUGCa -3'
miRNA:   3'- -GGGu-GGCac--CCugC-CGGGGGGu--CACG- -5'
28925 3' -63.4 NC_006146.1 + 125098 0.71 0.344356
Target:  5'- gCgGCCGUGGcGGCGGCCUUCCucgGCc -3'
miRNA:   3'- gGgUGGCACC-CUGCCGGGGGGucaCG- -5'
28925 3' -63.4 NC_006146.1 + 125937 0.67 0.572918
Target:  5'- gCCACCGcGGu-CGaGUCCCCCGGgGCc -3'
miRNA:   3'- gGGUGGCaCCcuGC-CGGGGGGUCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.