miRNA display CGI


Results 121 - 140 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 126669 0.66 0.648101
Target:  5'- aCCGCCGcccggccagaGGaGACGGUcaccaaggcaccgCCCCCGGcUGCa -3'
miRNA:   3'- gGGUGGCa---------CC-CUGCCG-------------GGGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 126935 0.66 0.629963
Target:  5'- uCCCGCUGgcaGGAUGGCgCUCuCCGG-GCg -3'
miRNA:   3'- -GGGUGGCac-CCUGCCG-GGG-GGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 127102 0.67 0.582367
Target:  5'- --aGCgGUGGGACaGGCaCgCCCAGaUGCu -3'
miRNA:   3'- gggUGgCACCCUG-CCG-GgGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 128052 0.72 0.323291
Target:  5'- aCCUGCgCGUGGGccugGCGGCCCUCgAG-GCc -3'
miRNA:   3'- -GGGUG-GCACCC----UGCCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 128264 0.67 0.572918
Target:  5'- gCCCACuaCGUGaGGcccacggcgGCGGCCgagCCCCAG-GCu -3'
miRNA:   3'- -GGGUG--GCAC-CC---------UGCCGG---GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 130468 0.69 0.45508
Target:  5'- aCCCGCCuacGGGGCcgcuGCCgCCCCGGgugGCu -3'
miRNA:   3'- -GGGUGGca-CCCUGc---CGG-GGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 130661 0.68 0.535539
Target:  5'- uCCCACCcgagGUcGGACuacaucccgGGCCCCUCGcGUGCc -3'
miRNA:   3'- -GGGUGG----CAcCCUG---------CCGGGGGGU-CACG- -5'
28925 3' -63.4 NC_006146.1 + 136792 0.68 0.520822
Target:  5'- uCCC-CCGUgaacGGGGCGcgcugggucgcggcuGCCCCCCGGgacccccgGCc -3'
miRNA:   3'- -GGGuGGCA----CCCUGC---------------CGGGGGGUCa-------CG- -5'
28925 3' -63.4 NC_006146.1 + 137552 0.67 0.582367
Target:  5'- aCCCACCG-GcGGccaccCGGCUgCCCCGGaGCa -3'
miRNA:   3'- -GGGUGGCaC-CCu----GCCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 137674 0.66 0.620417
Target:  5'- aCCCGCCG-GcGGccaccCGGCUgCCCCGGaGCa -3'
miRNA:   3'- -GGGUGGCaC-CCu----GCCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 137797 0.66 0.620417
Target:  5'- aCCCGCCG----GCGGCCaCCCGGcUGCc -3'
miRNA:   3'- -GGGUGGCacccUGCCGGgGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 139233 0.66 0.649055
Target:  5'- gCUGCUGUGGGGCuuguuggagaGGagaaCCCUCAGgUGCa -3'
miRNA:   3'- gGGUGGCACCCUG----------CCg---GGGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 139424 0.7 0.421458
Target:  5'- gCCUGCUGUuuaguaGGaGAaGGCCCCCaCGGUGCc -3'
miRNA:   3'- -GGGUGGCA------CC-CUgCCGGGGG-GUCACG- -5'
28925 3' -63.4 NC_006146.1 + 141670 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 141883 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 142579 0.7 0.397247
Target:  5'- gCCACCGggcGGGGCcaGGgCCUCCAGagGCa -3'
miRNA:   3'- gGGUGGCa--CCCUG--CCgGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 142993 0.71 0.358939
Target:  5'- gCCCuugGCCGUGGGAgcagcuccCGGUCCCCUccgcuugcGUGCc -3'
miRNA:   3'- -GGG---UGGCACCCU--------GCCGGGGGGu-------CACG- -5'
28925 3' -63.4 NC_006146.1 + 144747 0.66 0.6681
Target:  5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3'
miRNA:   3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 144961 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 145094 0.66 0.649055
Target:  5'- --uGCCGaGGGAUGGgUCCCCGGcGUa -3'
miRNA:   3'- gggUGGCaCCCUGCCgGGGGGUCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.