Results 61 - 80 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 115834 | 0.69 | 0.45508 |
Target: 5'- cCCUGCUGUGGGuccgauACGGCCgCCUguG-GCa -3' miRNA: 3'- -GGGUGGCACCC------UGCCGG-GGGguCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 115719 | 0.7 | 0.397247 |
Target: 5'- gCCCGCCGcggccgcagccUGGGACGcggucaCCCCCCuGcGCa -3' miRNA: 3'- -GGGUGGC-----------ACCCUGCc-----GGGGGGuCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 115195 | 0.67 | 0.601352 |
Target: 5'- gCCAgCG-GcGGGCaGaGCCCCCCGGcgGCg -3' miRNA: 3'- gGGUgGCaC-CCUG-C-CGGGGGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 115081 | 0.7 | 0.389378 |
Target: 5'- gCCCACCcaggccGGGACGGCCucuuccaccgCCCCgAGUcGCu -3' miRNA: 3'- -GGGUGGca----CCCUGCCGG----------GGGG-UCA-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 114649 | 0.73 | 0.260098 |
Target: 5'- cCCCGCCGa-GGACGGCCCCgCCuccGCc -3' miRNA: 3'- -GGGUGGCacCCUGCCGGGG-GGucaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 110409 | 0.75 | 0.217102 |
Target: 5'- cCUCGCCGUcggGGGAgcUGGCCCCCCGGc-- -3' miRNA: 3'- -GGGUGGCA---CCCU--GCCGGGGGGUCacg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 108921 | 0.66 | 0.6681 |
Target: 5'- aCCGagcaggugaCGUGGGccucaACGGCCCCCguGUc- -3' miRNA: 3'- gGGUg--------GCACCC-----UGCCGGGGGguCAcg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 104434 | 0.67 | 0.572918 |
Target: 5'- aCCUACaagGUggacaGGGGCGGCgCCCUCGGcagGCa -3' miRNA: 3'- -GGGUGg--CA-----CCCUGCCG-GGGGGUCa--CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 103539 | 0.66 | 0.6681 |
Target: 5'- cCCCGuacUCGUGGGAccCGGaCCCCgAGgauggGCu -3' miRNA: 3'- -GGGU---GGCACCCU--GCCgGGGGgUCa----CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 100967 | 0.66 | 0.658587 |
Target: 5'- gCCAgCGcGGGGCGGCUcaCCCUGGUc- -3' miRNA: 3'- gGGUgGCaCCCUGCCGG--GGGGUCAcg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 99030 | 0.71 | 0.366391 |
Target: 5'- aCgGCCGUGuagaGGCCCCCCAGgGCc -3' miRNA: 3'- gGgUGGCACccugCCGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 96143 | 0.66 | 0.639512 |
Target: 5'- uUCCugCGUcu--UGGCCCCCCGGagGCu -3' miRNA: 3'- -GGGugGCAcccuGCCGGGGGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 93604 | 0.67 | 0.554136 |
Target: 5'- aCCCGCCGggcuccUGGGGCuGCUguccuCCCCGGagGCc -3' miRNA: 3'- -GGGUGGC------ACCCUGcCGG-----GGGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 92079 | 0.69 | 0.490099 |
Target: 5'- gCUGCUGgGGGGCGGCCCggCCUGGgGCu -3' miRNA: 3'- gGGUGGCaCCCUGCCGGG--GGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 91284 | 0.7 | 0.438084 |
Target: 5'- aCCCuguCCccGGGACGaGCUCaCCGGUGCg -3' miRNA: 3'- -GGGu--GGcaCCCUGC-CGGGgGGUCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 86513 | 0.66 | 0.649055 |
Target: 5'- gCCUACCGgaGGccauGAUGGCCgCCCGGUccacGCc -3' miRNA: 3'- -GGGUGGCa-CC----CUGCCGGgGGGUCA----CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 83665 | 0.67 | 0.601352 |
Target: 5'- cUCCACCuuUGGGuuGGCCaCCCAGgugaugGCu -3' miRNA: 3'- -GGGUGGc-ACCCugCCGGgGGGUCa-----CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 69802 | 0.67 | 0.591847 |
Target: 5'- gCCCA-CGUGGGACgugaugGGCCgCgaAGUGCu -3' miRNA: 3'- -GGGUgGCACCCUG------CCGGgGggUCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 69052 | 0.66 | 0.639512 |
Target: 5'- gCCAcCCGUGGuGCGGCagCCCgAGcGCu -3' miRNA: 3'- gGGU-GGCACCcUGCCGg-GGGgUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 67927 | 0.74 | 0.256646 |
Target: 5'- gCCCACCGUGgaguaugucccggauGGGCGGCugCCCUCGGaggGCg -3' miRNA: 3'- -GGGUGGCAC---------------CCUGCCG--GGGGGUCa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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