miRNA display CGI


Results 81 - 100 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 66865 0.67 0.563506
Target:  5'- cCCCAgCGUccaGGGC-GCCCCCCGG-GUc -3'
miRNA:   3'- -GGGUgGCAc--CCUGcCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 64379 0.67 0.614692
Target:  5'- gCCCACCaG-GGGAUGcGCCCaCCUGucugacuuggcccccGUGCa -3'
miRNA:   3'- -GGGUGG-CaCCCUGC-CGGG-GGGU---------------CACG- -5'
28925 3' -63.4 NC_006146.1 + 64227 0.67 0.554136
Target:  5'- cCCCAgggaucCCGUGcccggggagaGGACGGCCCUgaCCAGccgGCc -3'
miRNA:   3'- -GGGU------GGCAC----------CCUGCCGGGG--GGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 59155 0.73 0.296721
Target:  5'- gCCCGCCucaGGGAC-GCCaCCCAGUGUg -3'
miRNA:   3'- -GGGUGGca-CCCUGcCGGgGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 57778 0.68 0.499051
Target:  5'- aCCCACCG-GcGGAagacaUGGCauCCCCCGGggaGCg -3'
miRNA:   3'- -GGGUGGCaC-CCU-----GCCG--GGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 57383 0.68 0.544812
Target:  5'- -gCGCCgGUGGGcUGGCCCCgCGaccGUGCc -3'
miRNA:   3'- ggGUGG-CACCCuGCCGGGGgGU---CACG- -5'
28925 3' -63.4 NC_006146.1 + 57281 0.71 0.366391
Target:  5'- -gCACCGUcaagcuGACGGUCCCCCAGgagGCc -3'
miRNA:   3'- ggGUGGCAcc----CUGCCGGGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 57177 0.68 0.517166
Target:  5'- cCUCACCcca-GugGGCCCCCUGGUGg -3'
miRNA:   3'- -GGGUGGcaccCugCCGGGGGGUCACg -5'
28925 3' -63.4 NC_006146.1 + 56804 0.67 0.591847
Target:  5'- gCgGCCGUcuggcgggcGGGGCuucuGGCCCCCgAG-GCg -3'
miRNA:   3'- gGgUGGCA---------CCCUG----CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 56639 0.66 0.619462
Target:  5'- uCCUAUC-UGGGGCaccacuacgagcuGGCCCUCCcugaGGUGCc -3'
miRNA:   3'- -GGGUGGcACCCUG-------------CCGGGGGG----UCACG- -5'
28925 3' -63.4 NC_006146.1 + 55934 0.69 0.481223
Target:  5'- gCgGCCGUGGGcugcuGCGuGCCCCCCGc--- -3'
miRNA:   3'- gGgUGGCACCC-----UGC-CGGGGGGUcacg -5'
28925 3' -63.4 NC_006146.1 + 54986 0.71 0.358939
Target:  5'- cCCCGuacCCG-GGGugGccggaaGCCCCCCGG-GCg -3'
miRNA:   3'- -GGGU---GGCaCCCugC------CGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 54567 0.68 0.508074
Target:  5'- cCCCACCGUGGGcaugaucaGGgaCCUCuGUGCc -3'
miRNA:   3'- -GGGUGGCACCCug------CCggGGGGuCACG- -5'
28925 3' -63.4 NC_006146.1 + 54131 0.7 0.413289
Target:  5'- gCagguCCGUGGaGuaguaGCGGCCCCCC-GUGCc -3'
miRNA:   3'- gGgu--GGCACC-C-----UGCCGGGGGGuCACG- -5'
28925 3' -63.4 NC_006146.1 + 53097 0.67 0.553201
Target:  5'- cCCCuCCGUcuaguccGGaGGCGGCCCggCCCGGgggaGCg -3'
miRNA:   3'- -GGGuGGCA-------CC-CUGCCGGG--GGGUCa---CG- -5'
28925 3' -63.4 NC_006146.1 + 52903 0.68 0.526323
Target:  5'- cCCCGCa-UGGucugcgUGGCCCCCCGGggGCg -3'
miRNA:   3'- -GGGUGgcACCcu----GCCGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 52244 0.67 0.591847
Target:  5'- cCCCACCauugcucaUGGaGACGGCCggagaCCCAGcaaGCa -3'
miRNA:   3'- -GGGUGGc-------ACC-CUGCCGGg----GGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 51926 0.71 0.344356
Target:  5'- -gCACCGacGGGCGGCCCC--GGUGCg -3'
miRNA:   3'- ggGUGGCacCCUGCCGGGGggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 49874 0.66 0.6681
Target:  5'- aUCACCGUcGGGAggcuggGGUCCUCCGGUa- -3'
miRNA:   3'- gGGUGGCA-CCCUg-----CCGGGGGGUCAcg -5'
28925 3' -63.4 NC_006146.1 + 45522 0.66 0.658587
Target:  5'- gCCACgGUGGGGgccugGGCCUCCUuggGCu -3'
miRNA:   3'- gGGUGgCACCCUg----CCGGGGGGucaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.