Results 101 - 120 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 45017 | 0.73 | 0.258943 |
Target: 5'- cCCCACCGUcccucgagagugaGGGAgagaggccggggcCGGCUCCCUAGggGCg -3' miRNA: 3'- -GGGUGGCA-------------CCCU-------------GCCGGGGGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 44821 | 0.66 | 0.620417 |
Target: 5'- aCCuCUGUagGGGGcCGGCgCCCCUcGUGCc -3' miRNA: 3'- gGGuGGCA--CCCU-GCCG-GGGGGuCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 42677 | 0.73 | 0.277319 |
Target: 5'- gCCCGCgGUGGGcugccugaggcugGCaGaGCCCCCCAGcGCc -3' miRNA: 3'- -GGGUGgCACCC-------------UG-C-CGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 42638 | 0.67 | 0.610878 |
Target: 5'- gCCGCCGUGGgccucacguaGugGGCCCagaGGUaGCg -3' miRNA: 3'- gGGUGGCACC----------CugCCGGGgggUCA-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 42419 | 0.7 | 0.413289 |
Target: 5'- gCCCGCCGUGGGcccccUGGCCUacaAGUGUu -3' miRNA: 3'- -GGGUGGCACCCu----GCCGGGgggUCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 42374 | 0.68 | 0.517166 |
Target: 5'- gCCGCCaggGUGGGcgaGgGGCgCCCCAGgGCc -3' miRNA: 3'- gGGUGG---CACCC---UgCCGgGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 40978 | 0.74 | 0.232466 |
Target: 5'- aCCGCCGUGGuGccgcgcCGGCgCCCCAGgGCg -3' miRNA: 3'- gGGUGGCACC-Cu-----GCCGgGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 40426 | 0.7 | 0.420637 |
Target: 5'- gCCACCc-GGGGCGGCagcggCCCCguaggcgGGUGCg -3' miRNA: 3'- gGGUGGcaCCCUGCCGg----GGGG-------UCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 36150 | 0.7 | 0.437244 |
Target: 5'- uCCCACUcUGGGACgagcguuGGCCUggcuggCCUGGUGCa -3' miRNA: 3'- -GGGUGGcACCCUG-------CCGGG------GGGUCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35695 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35602 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35509 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35416 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35323 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35230 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35137 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 35044 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 34951 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 34859 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 34766 | 0.69 | 0.490099 |
Target: 5'- cCCCGCCGgagcGGGGCaGCggaCCCAGggGCa -3' miRNA: 3'- -GGGUGGCa---CCCUGcCGgg-GGGUCa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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