miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 170167 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 42419 0.7 0.413289
Target:  5'- gCCCGCCGUGGGcccccUGGCCUacaAGUGUu -3'
miRNA:   3'- -GGGUGGCACCCu----GCCGGGgggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 42677 0.73 0.277319
Target:  5'- gCCCGCgGUGGGcugccugaggcugGCaGaGCCCCCCAGcGCc -3'
miRNA:   3'- -GGGUGgCACCC-------------UG-C-CGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 169236 0.67 0.554136
Target:  5'- gCCgGCCG-GGGGCugagggGGCUCCCgAGgGCg -3'
miRNA:   3'- -GGgUGGCaCCCUG------CCGGGGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 45017 0.73 0.258943
Target:  5'- cCCCACCGUcccucgagagugaGGGAgagaggccggggcCGGCUCCCUAGggGCg -3'
miRNA:   3'- -GGGUGGCA-------------CCCU-------------GCCGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 8589 0.66 0.656682
Target:  5'- aCCC-CCGgguaugugagcgGGucagaaagacucGACGGCCCCUgGGUGUc -3'
miRNA:   3'- -GGGuGGCa-----------CC------------CUGCCGGGGGgUCACG- -5'
28925 3' -63.4 NC_006146.1 + 3747 0.72 0.316486
Target:  5'- gCCCuucagcCCG-GGGugGGUCCCCUAGaccUGCc -3'
miRNA:   3'- -GGGu-----GGCaCCCugCCGGGGGGUC---ACG- -5'
28925 3' -63.4 NC_006146.1 + 33185 0.66 0.649055
Target:  5'- gCCGCCGcucGGuccugGGCCUCCgGGUGCu -3'
miRNA:   3'- gGGUGGCac-CCug---CCGGGGGgUCACG- -5'
28925 3' -63.4 NC_006146.1 + 146012 0.66 0.638557
Target:  5'- gCCCACCGaggggcaggGGGGCaGCUCCuggcacugcgcguCCAGcUGCa -3'
miRNA:   3'- -GGGUGGCa--------CCCUGcCGGGG-------------GGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 69802 0.67 0.591847
Target:  5'- gCCCA-CGUGGGACgugaugGGCCgCgaAGUGCu -3'
miRNA:   3'- -GGGUgGCACCCUG------CCGGgGggUCACG- -5'
28925 3' -63.4 NC_006146.1 + 26156 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 13845 0.67 0.582367
Target:  5'- gCCgGCCGgaGGGAcccCGGCggCCCGGUGUg -3'
miRNA:   3'- -GGgUGGCa-CCCU---GCCGggGGGUCACG- -5'
28925 3' -63.4 NC_006146.1 + 66865 0.67 0.563506
Target:  5'- cCCCAgCGUccaGGGC-GCCCCCCGG-GUc -3'
miRNA:   3'- -GGGUgGCAc--CCUGcCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 93604 0.67 0.554136
Target:  5'- aCCCGCCGggcuccUGGGGCuGCUguccuCCCCGGagGCc -3'
miRNA:   3'- -GGGUGGC------ACCCUGcCGG-----GGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 57383 0.68 0.544812
Target:  5'- -gCGCCgGUGGGcUGGCCCCgCGaccGUGCc -3'
miRNA:   3'- ggGUGG-CACCCuGCCGGGGgGU---CACG- -5'
28925 3' -63.4 NC_006146.1 + 57778 0.68 0.499051
Target:  5'- aCCCACCG-GcGGAagacaUGGCauCCCCCGGggaGCg -3'
miRNA:   3'- -GGGUGGCaC-CCU-----GCCG--GGGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 130468 0.69 0.45508
Target:  5'- aCCCGCCuacGGGGCcgcuGCCgCCCCGGgugGCu -3'
miRNA:   3'- -GGGUGGca-CCCUGc---CGG-GGGGUCa--CG- -5'
28925 3' -63.4 NC_006146.1 + 161979 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 161778 0.7 0.389378
Target:  5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3'
miRNA:   3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5'
28925 3' -63.4 NC_006146.1 + 142993 0.71 0.358939
Target:  5'- gCCCuugGCCGUGGGAgcagcuccCGGUCCCCUccgcuugcGUGCc -3'
miRNA:   3'- -GGG---UGGCACCCU--------GCCGGGGGGu-------CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.