Results 41 - 60 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 141670 | 0.66 | 0.6681 |
Target: 5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3' miRNA: 3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 144747 | 0.66 | 0.6681 |
Target: 5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3' miRNA: 3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 147825 | 0.66 | 0.6681 |
Target: 5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3' miRNA: 3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 150903 | 0.66 | 0.6681 |
Target: 5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3' miRNA: 3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 153981 | 0.66 | 0.6681 |
Target: 5'- gCCGCCG-GGGucccuccggcCGGCCUgauggaCCCGGUGg -3' miRNA: 3'- gGGUGGCaCCCu---------GCCGGG------GGGUCACg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 139233 | 0.66 | 0.649055 |
Target: 5'- gCUGCUGUGGGGCuuguuggagaGGagaaCCCUCAGgUGCa -3' miRNA: 3'- gGGUGGCACCCUG----------CCg---GGGGGUC-ACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 126669 | 0.66 | 0.648101 |
Target: 5'- aCCGCCGcccggccagaGGaGACGGUcaccaaggcaccgCCCCCGGcUGCa -3' miRNA: 3'- gGGUGGCa---------CC-CUGCCG-------------GGGGGUC-ACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 137797 | 0.66 | 0.620417 |
Target: 5'- aCCCGCCG----GCGGCCaCCCGGcUGCc -3' miRNA: 3'- -GGGUGGCacccUGCCGGgGGGUC-ACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 267 | 0.66 | 0.629009 |
Target: 5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3' miRNA: 3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 1198 | 0.66 | 0.629009 |
Target: 5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3' miRNA: 3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 2130 | 0.66 | 0.629009 |
Target: 5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3' miRNA: 3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 3062 | 0.66 | 0.629009 |
Target: 5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3' miRNA: 3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 24039 | 0.66 | 0.629963 |
Target: 5'- cCCC-CUGgcgGGGugacGCGGCCCCgagCCAG-GCc -3' miRNA: 3'- -GGGuGGCa--CCC----UGCCGGGG---GGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 96143 | 0.66 | 0.639512 |
Target: 5'- uUCCugCGUcu--UGGCCCCCCGGagGCu -3' miRNA: 3'- -GGGugGCAcccuGCCGGGGGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 141883 | 0.66 | 0.639512 |
Target: 5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3' miRNA: 3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 144961 | 0.66 | 0.639512 |
Target: 5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3' miRNA: 3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 148039 | 0.66 | 0.639512 |
Target: 5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3' miRNA: 3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 151117 | 0.66 | 0.639512 |
Target: 5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3' miRNA: 3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 154195 | 0.66 | 0.639512 |
Target: 5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3' miRNA: 3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 157273 | 0.66 | 0.639512 |
Target: 5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3' miRNA: 3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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