Results 81 - 100 of 171 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 104434 | 0.67 | 0.572918 |
Target: 5'- aCCUACaagGUggacaGGGGCGGCgCCCUCGGcagGCa -3' miRNA: 3'- -GGGUGg--CA-----CCCUGCCG-GGGGGUCa--CG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 125937 | 0.67 | 0.572918 |
Target: 5'- gCCACCGcGGu-CGaGUCCCCCGGgGCc -3' miRNA: 3'- gGGUGGCaCCcuGC-CGGGGGGUCaCG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 31755 | 0.67 | 0.563506 |
Target: 5'- cCCCcCCGgGGGACGGgagCCCCCGuucgGCc -3' miRNA: 3'- -GGGuGGCaCCCUGCCg--GGGGGUca--CG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 118975 | 0.67 | 0.563506 |
Target: 5'- aCCgCACCG-GGG-CcGCCCgUCGGUGCc -3' miRNA: 3'- -GG-GUGGCaCCCuGcCGGGgGGUCACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 8855 | 0.68 | 0.544812 |
Target: 5'- cCCCGCgGUGGaacCGGuUUCCCaCAGUGCc -3' miRNA: 3'- -GGGUGgCACCcu-GCC-GGGGG-GUCACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 21691 | 0.68 | 0.544812 |
Target: 5'- aCUGCUGcagGGGGCGGCCaacauCCUgCAGUGCc -3' miRNA: 3'- gGGUGGCa--CCCUGCCGG-----GGG-GUCACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 167160 | 0.68 | 0.530002 |
Target: 5'- aCCCACCccGGGcugaagggccacGCGGCCCCCagagacccugucuGUGUg -3' miRNA: 3'- -GGGUGGcaCCC------------UGCCGGGGGgu-----------CACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 137552 | 0.67 | 0.582367 |
Target: 5'- aCCCACCG-GcGGccaccCGGCUgCCCCGGaGCa -3' miRNA: 3'- -GGGUGGCaC-CCu----GCCGG-GGGGUCaCG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 13381 | 0.67 | 0.590898 |
Target: 5'- aCCACCGUGGucugcGCGGCCacggacugCCUCAGccaggucUGCa -3' miRNA: 3'- gGGUGGCACCc----UGCCGG--------GGGGUC-------ACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 52244 | 0.67 | 0.591847 |
Target: 5'- cCCCACCauugcucaUGGaGACGGCCggagaCCCAGcaaGCa -3' miRNA: 3'- -GGGUGGc-------ACC-CUGCCGGg----GGGUCa--CG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 267 | 0.66 | 0.629009 |
Target: 5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3' miRNA: 3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 137797 | 0.66 | 0.620417 |
Target: 5'- aCCCGCCG----GCGGCCaCCCGGcUGCc -3' miRNA: 3'- -GGGUGGCacccUGCCGGgGGGUC-ACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 44821 | 0.66 | 0.620417 |
Target: 5'- aCCuCUGUagGGGGcCGGCgCCCCUcGUGCc -3' miRNA: 3'- gGGuGGCA--CCCU-GCCG-GGGGGuCACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 137674 | 0.66 | 0.620417 |
Target: 5'- aCCCGCCG-GcGGccaccCGGCUgCCCCGGaGCa -3' miRNA: 3'- -GGGUGGCaC-CCu----GCCGG-GGGGUCaCG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 8706 | 0.66 | 0.620417 |
Target: 5'- gCCACCuGUGGGGCGGaguuugcaCCCCAa--- -3' miRNA: 3'- gGGUGG-CACCCUGCCgg------GGGGUcacg -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 56639 | 0.66 | 0.619462 |
Target: 5'- uCCUAUC-UGGGGCaccacuacgagcuGGCCCUCCcugaGGUGCc -3' miRNA: 3'- -GGGUGGcACCCUG-------------CCGGGGGG----UCACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 64379 | 0.67 | 0.614692 |
Target: 5'- gCCCACCaG-GGGAUGcGCCCaCCUGucugacuuggcccccGUGCa -3' miRNA: 3'- -GGGUGG-CaCCCUGC-CGGG-GGGU---------------CACG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 42638 | 0.67 | 0.610878 |
Target: 5'- gCCGCCGUGGgccucacguaGugGGCCCagaGGUaGCg -3' miRNA: 3'- gGGUGGCACC----------CugCCGGGgggUCA-CG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 115195 | 0.67 | 0.601352 |
Target: 5'- gCCAgCG-GcGGGCaGaGCCCCCCGGcgGCg -3' miRNA: 3'- gGGUgGCaC-CCUG-C-CGGGGGGUCa-CG- -5' |
|||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 136792 | 0.68 | 0.520822 |
Target: 5'- uCCC-CCGUgaacGGGGCGcgcugggucgcggcuGCCCCCCGGgacccccgGCc -3' miRNA: 3'- -GGGuGGCA----CCCUGC---------------CGGGGGGUCa-------CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home