Results 101 - 120 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28925 | 3' | -63.4 | NC_006146.1 | + | 56639 | 0.66 | 0.619462 |
Target: 5'- uCCUAUC-UGGGGCaccacuacgagcuGGCCCUCCcugaGGUGCc -3' miRNA: 3'- -GGGUGGcACCCUG-------------CCGGGGGG----UCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 64379 | 0.67 | 0.614692 |
Target: 5'- gCCCACCaG-GGGAUGcGCCCaCCUGucugacuuggcccccGUGCa -3' miRNA: 3'- -GGGUGG-CaCCCUGC-CGGG-GGGU---------------CACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 42638 | 0.67 | 0.610878 |
Target: 5'- gCCGCCGUGGgccucacguaGugGGCCCagaGGUaGCg -3' miRNA: 3'- gGGUGGCACC----------CugCCGGGgggUCA-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 115195 | 0.67 | 0.601352 |
Target: 5'- gCCAgCG-GcGGGCaGaGCCCCCCGGcgGCg -3' miRNA: 3'- gGGUgGCaC-CCUG-C-CGGGGGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 52244 | 0.67 | 0.591847 |
Target: 5'- cCCCACCauugcucaUGGaGACGGCCggagaCCCAGcaaGCa -3' miRNA: 3'- -GGGUGGc-------ACC-CUGCCGGg----GGGUCa--CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 13381 | 0.67 | 0.590898 |
Target: 5'- aCCACCGUGGucugcGCGGCCacggacugCCUCAGccaggucUGCa -3' miRNA: 3'- gGGUGGCACCc----UGCCGG--------GGGGUC-------ACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 137552 | 0.67 | 0.582367 |
Target: 5'- aCCCACCG-GcGGccaccCGGCUgCCCCGGaGCa -3' miRNA: 3'- -GGGUGGCaC-CCu----GCCGG-GGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 119169 | 0.67 | 0.582367 |
Target: 5'- gCCCACCucGGGGCGccGCCuCCCCA-UGUc -3' miRNA: 3'- -GGGUGGcaCCCUGC--CGG-GGGGUcACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 142993 | 0.71 | 0.358939 |
Target: 5'- gCCCuugGCCGUGGGAgcagcuccCGGUCCCCUccgcuugcGUGCc -3' miRNA: 3'- -GGG---UGGCACCCU--------GCCGGGGGGu-------CACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 54986 | 0.71 | 0.358939 |
Target: 5'- cCCCGuacCCG-GGGugGccggaaGCCCCCCGG-GCg -3' miRNA: 3'- -GGGU---GGCaCCCugC------CGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 57281 | 0.71 | 0.366391 |
Target: 5'- -gCACCGUcaagcuGACGGUCCCCCAGgagGCc -3' miRNA: 3'- ggGUGGCAcc----CUGCCGGGGGGUCa--CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 99030 | 0.71 | 0.366391 |
Target: 5'- aCgGCCGUGuagaGGCCCCCCAGgGCc -3' miRNA: 3'- gGgUGGCACccugCCGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 161778 | 0.7 | 0.389378 |
Target: 5'- gCC-CCGUGGGAgacCGGCUCCaCGGUGg -3' miRNA: 3'- gGGuGGCACCCU---GCCGGGGgGUCACg -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 51926 | 0.71 | 0.344356 |
Target: 5'- -gCACCGacGGGCGGCCCC--GGUGCg -3' miRNA: 3'- ggGUGGCacCCUGCCGGGGggUCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 128052 | 0.72 | 0.323291 |
Target: 5'- aCCUGCgCGUGGGccugGCGGCCCUCgAG-GCc -3' miRNA: 3'- -GGGUG-GCACCC----UGCCGGGGGgUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 3747 | 0.72 | 0.316486 |
Target: 5'- gCCCuucagcCCG-GGGugGGUCCCCUAGaccUGCc -3' miRNA: 3'- -GGGu-----GGCaCCCugCCGGGGGGUC---ACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 59155 | 0.73 | 0.296721 |
Target: 5'- gCCCGCCucaGGGAC-GCCaCCCAGUGUg -3' miRNA: 3'- -GGGUGGca-CCCUGcCGGgGGGUCACG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 42677 | 0.73 | 0.277319 |
Target: 5'- gCCCGCgGUGGGcugccugaggcugGCaGaGCCCCCCAGcGCc -3' miRNA: 3'- -GGGUGgCACCC-------------UG-C-CGGGGGGUCaCG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 45017 | 0.73 | 0.258943 |
Target: 5'- cCCCACCGUcccucgagagugaGGGAgagaggccggggcCGGCUCCCUAGggGCg -3' miRNA: 3'- -GGGUGGCA-------------CCCU-------------GCCGGGGGGUCa-CG- -5' |
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28925 | 3' | -63.4 | NC_006146.1 | + | 169993 | 0.66 | 0.6681 |
Target: 5'- gCCCGgggucCCGgGGGGCGGCgcgcggccuuCCCCCGucUGCu -3' miRNA: 3'- -GGGU-----GGCaCCCUGCCG----------GGGGGUc-ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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