miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 3' -63.4 NC_006146.1 + 8589 0.66 0.656682
Target:  5'- aCCC-CCGgguaugugagcgGGucagaaagacucGACGGCCCCUgGGUGUc -3'
miRNA:   3'- -GGGuGGCa-----------CC------------CUGCCGGGGGgUCACG- -5'
28925 3' -63.4 NC_006146.1 + 86513 0.66 0.649055
Target:  5'- gCCUACCGgaGGccauGAUGGCCgCCCGGUccacGCc -3'
miRNA:   3'- -GGGUGGCa-CC----CUGCCGGgGGGUCA----CG- -5'
28925 3' -63.4 NC_006146.1 + 33185 0.66 0.649055
Target:  5'- gCCGCCGcucGGuccugGGCCUCCgGGUGCu -3'
miRNA:   3'- gGGUGGCac-CCug---CCGGGGGgUCACG- -5'
28925 3' -63.4 NC_006146.1 + 115845 0.66 0.649055
Target:  5'- aCCACCGUc--AUGGCCaCCCCGGgGUg -3'
miRNA:   3'- gGGUGGCAcccUGCCGG-GGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 139233 0.66 0.649055
Target:  5'- gCUGCUGUGGGGCuuguuggagaGGagaaCCCUCAGgUGCa -3'
miRNA:   3'- gGGUGGCACCCUG----------CCg---GGGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 145094 0.66 0.649055
Target:  5'- --uGCCGaGGGAUGGgUCCCCGGcGUa -3'
miRNA:   3'- gggUGGCaCCCUGCCgGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 126669 0.66 0.648101
Target:  5'- aCCGCCGcccggccagaGGaGACGGUcaccaaggcaccgCCCCCGGcUGCa -3'
miRNA:   3'- gGGUGGCa---------CC-CUGCCG-------------GGGGGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 151117 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 154195 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 144961 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 148039 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 141883 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 96143 0.66 0.639512
Target:  5'- uUCCugCGUcu--UGGCCCCCCGGagGCu -3'
miRNA:   3'- -GGGugGCAcccuGCCGGGGGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 69052 0.66 0.639512
Target:  5'- gCCAcCCGUGGuGCGGCagCCCgAGcGCu -3'
miRNA:   3'- gGGU-GGCACCcUGCCGg-GGGgUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 157273 0.66 0.639512
Target:  5'- gCUGCUG-GGGACcagGGCCUCCUGG-GCg -3'
miRNA:   3'- gGGUGGCaCCCUG---CCGGGGGGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 146012 0.66 0.638557
Target:  5'- gCCCACCGaggggcaggGGGGCaGCUCCuggcacugcgcguCCAGcUGCa -3'
miRNA:   3'- -GGGUGGCa--------CCCUGcCGGGG-------------GGUC-ACG- -5'
28925 3' -63.4 NC_006146.1 + 126935 0.66 0.629963
Target:  5'- uCCCGCUGgcaGGAUGGCgCUCuCCGG-GCg -3'
miRNA:   3'- -GGGUGGCac-CCUGCCG-GGG-GGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 24039 0.66 0.629963
Target:  5'- cCCC-CUGgcgGGGugacGCGGCCCCgagCCAG-GCc -3'
miRNA:   3'- -GGGuGGCa--CCC----UGCCGGGG---GGUCaCG- -5'
28925 3' -63.4 NC_006146.1 + 267 0.66 0.629009
Target:  5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3'
miRNA:   3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5'
28925 3' -63.4 NC_006146.1 + 2130 0.66 0.629009
Target:  5'- gCCCAcCCGUGaGGGgGaGCCCgggaagaCCCGGggGCg -3'
miRNA:   3'- -GGGU-GGCAC-CCUgC-CGGG-------GGGUCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.