miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 5' -51 NC_006146.1 + 14814 0.66 0.993018
Target:  5'- cCGGCCGggcCGGAGGAGGGCacggUCUcgggcccgggGCCGCg -3'
miRNA:   3'- -GUUGGC---GCCUUUUUCUGa---AGG----------CGGUG- -5'
28925 5' -51 NC_006146.1 + 117695 0.66 0.993018
Target:  5'- --cCCGCGGAGuuuGGCa--CGCCGCc -3'
miRNA:   3'- guuGGCGCCUUuuuCUGaagGCGGUG- -5'
28925 5' -51 NC_006146.1 + 99329 0.66 0.991967
Target:  5'- -uGCUGCGGAAGccgcucuGGCUgUCUGUCGCa -3'
miRNA:   3'- guUGGCGCCUUUuu-----CUGA-AGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 15717 0.66 0.991967
Target:  5'- uGGCCGaGGAGAgGGGGCUguuuccUCCGCCcaGCa -3'
miRNA:   3'- gUUGGCgCCUUU-UUCUGA------AGGCGG--UG- -5'
28925 5' -51 NC_006146.1 + 68121 0.67 0.990793
Target:  5'- cCGGuCCGCGGuGAgcGGCgccaCGCCACg -3'
miRNA:   3'- -GUU-GGCGCCuUUuuCUGaag-GCGGUG- -5'
28925 5' -51 NC_006146.1 + 1917 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 1949 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2881 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2849 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2156 0.67 0.990793
Target:  5'- aGACC-CGGggGcGGGCcacgcgcgcCCGCCACg -3'
miRNA:   3'- gUUGGcGCCuuUuUCUGaa-------GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 24671 0.67 0.990793
Target:  5'- --cCCGUGGAAGA--ACUgcagccauggCCGCCGCu -3'
miRNA:   3'- guuGGCGCCUUUUucUGAa---------GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 1224 0.67 0.990793
Target:  5'- aGACC-CGGggGcGGGCcacgcgcgcCCGCCACg -3'
miRNA:   3'- gUUGGcGCCuuUuUCUGaa-------GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 1016 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 149 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 117 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 53 0.67 0.990793
Target:  5'- uGAUUuCGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcGCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 128196 0.67 0.990793
Target:  5'- cCAGCCcgaGCGGGcgcuGGGGGGCU-CUGCCAg -3'
miRNA:   3'- -GUUGG---CGCCU----UUUUCUGAaGGCGGUg -5'
28925 5' -51 NC_006146.1 + 3088 0.67 0.990793
Target:  5'- aGACC-CGGggGcGGGCcacgcgcgcCCGCCACg -3'
miRNA:   3'- gUUGGcGCCuuUuUCUGaa-------GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 40363 0.67 0.989489
Target:  5'- -uGCgGCGGAGAAGGccccCUggUCGCCGCc -3'
miRNA:   3'- guUGgCGCCUUUUUCu---GAa-GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 84079 0.67 0.989489
Target:  5'- -uGCaCG-GGggGGAGAUaUCUGCCACc -3'
miRNA:   3'- guUG-GCgCCuuUUUCUGaAGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.