miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 123372 0.66 0.99458
Target:  5'- gCGCUGgccggGGGCCC-CGCaACCUgGCugGa -3'
miRNA:   3'- gGUGAU-----UCCGGGuGUG-UGGAaUGugU- -5'
28926 3' -51.3 NC_006146.1 + 44098 0.66 0.99458
Target:  5'- uCCACcucGGgCCGCGCGCUcgGCGCc -3'
miRNA:   3'- -GGUGauuCCgGGUGUGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 71097 0.66 0.99458
Target:  5'- cCCAgaGAGGCCCAUugcaGCACUa-GCAUg -3'
miRNA:   3'- -GGUgaUUCCGGGUG----UGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 134132 0.66 0.99458
Target:  5'- aCAcCUAGGG-CCACcC-CCUUACGCGg -3'
miRNA:   3'- gGU-GAUUCCgGGUGuGuGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 58878 0.66 0.99458
Target:  5'- uCCugUgaagGAGGCCUGCAacgccCACUUUugGCGc -3'
miRNA:   3'- -GGugA----UUCCGGGUGU-----GUGGAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 47666 0.66 0.99458
Target:  5'- aCCACgcaGGGGCCCAaccuCGCCcugUAC-CAg -3'
miRNA:   3'- -GGUGa--UUCCGGGUgu--GUGGa--AUGuGU- -5'
28926 3' -51.3 NC_006146.1 + 53337 0.66 0.99458
Target:  5'- aCACgccGGCCCAUAC-CCUga-ACAg -3'
miRNA:   3'- gGUGauuCCGGGUGUGuGGAaugUGU- -5'
28926 3' -51.3 NC_006146.1 + 55704 0.66 0.993722
Target:  5'- gCCGCcggGGGGCucugcccgCCGCugGCCUccgcgUACACGc -3'
miRNA:   3'- -GGUGa--UUCCG--------GGUGugUGGA-----AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 146457 0.66 0.993722
Target:  5'- ------cGGUCCACACACgCggGCGCAg -3'
miRNA:   3'- ggugauuCCGGGUGUGUG-GaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 45288 0.66 0.993722
Target:  5'- gCCcCUGAGGCCCGcCAgACCaagACcCAg -3'
miRNA:   3'- -GGuGAUUCCGGGU-GUgUGGaa-UGuGU- -5'
28926 3' -51.3 NC_006146.1 + 100063 0.66 0.993722
Target:  5'- cUCACUcGGGCCCGCuugGCCcUugGCc -3'
miRNA:   3'- -GGUGAuUCCGGGUGug-UGGaAugUGu -5'
28926 3' -51.3 NC_006146.1 + 88992 0.66 0.993722
Target:  5'- -gGCUGAGGCuCCcCAUAUgUUugGCAc -3'
miRNA:   3'- ggUGAUUCCG-GGuGUGUGgAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 86533 0.66 0.993722
Target:  5'- gCCGCcc-GGUCCACgccuaGCACCUUGCu-- -3'
miRNA:   3'- -GGUGauuCCGGGUG-----UGUGGAAUGugu -5'
28926 3' -51.3 NC_006146.1 + 11572 0.66 0.993722
Target:  5'- gCUGCUAAGGaCCCACuACAaauaCUcugUGCACu -3'
miRNA:   3'- -GGUGAUUCC-GGGUG-UGUg---GA---AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 24523 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 21445 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 27601 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18367 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 36692 0.66 0.992758
Target:  5'- uCCACUAAGGggggaCCAUGCAUCgaaggGCugGg -3'
miRNA:   3'- -GGUGAUUCCg----GGUGUGUGGaa---UGugU- -5'
28926 3' -51.3 NC_006146.1 + 118921 0.66 0.992758
Target:  5'- aCGCgcccGGCCCGCAUGCCggAgACc -3'
miRNA:   3'- gGUGauu-CCGGGUGUGUGGaaUgUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.