miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 123372 0.66 0.99458
Target:  5'- gCGCUGgccggGGGCCC-CGCaACCUgGCugGa -3'
miRNA:   3'- gGUGAU-----UCCGGGuGUG-UGGAaUGugU- -5'
28926 3' -51.3 NC_006146.1 + 14676 0.66 0.99168
Target:  5'- uCCACggccgagGGGGCCCGCGucuccugcaacCACCUgGCGg- -3'
miRNA:   3'- -GGUGa------UUCCGGGUGU-----------GUGGAaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 71863 0.66 0.990479
Target:  5'- cCCGCc-GGGCCCugGgggGCCUcUACACGg -3'
miRNA:   3'- -GGUGauUCCGGGugUg--UGGA-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 71543 0.66 0.990479
Target:  5'- aCGCgc-GGCCCGgGCGCCg-ACGCu -3'
miRNA:   3'- gGUGauuCCGGGUgUGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 71080 0.66 0.990479
Target:  5'- uCCACcGAGGCCCcgaACACCcccuCGCc -3'
miRNA:   3'- -GGUGaUUCCGGGug-UGUGGaau-GUGu -5'
28926 3' -51.3 NC_006146.1 + 86830 0.66 0.990351
Target:  5'- cUCGCccguGGGCCUugGCaucauuuauaaauGCCUUGCAUAu -3'
miRNA:   3'- -GGUGau--UCCGGGugUG-------------UGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 152033 0.66 0.990479
Target:  5'- -gGCUGAGGCCCcCGCACgUc-CACc -3'
miRNA:   3'- ggUGAUUCCGGGuGUGUGgAauGUGu -5'
28926 3' -51.3 NC_006146.1 + 41621 0.66 0.99168
Target:  5'- uCCGCU-GGGCCCGgGCGCag-AC-CAg -3'
miRNA:   3'- -GGUGAuUCCGGGUgUGUGgaaUGuGU- -5'
28926 3' -51.3 NC_006146.1 + 155414 0.66 0.99168
Target:  5'- aCCACgucccCCCACACGCgCagGCACAg -3'
miRNA:   3'- -GGUGauuccGGGUGUGUG-GaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 23180 0.66 0.99168
Target:  5'- cCCGCUAuuacccAGGCCC-CGcCGCCUUcCugGc -3'
miRNA:   3'- -GGUGAU------UCCGGGuGU-GUGGAAuGugU- -5'
28926 3' -51.3 NC_006146.1 + 90863 0.66 0.99168
Target:  5'- aCCGCUGucuGGCCgccaucauaaaGCACACCaUUugACGu -3'
miRNA:   3'- -GGUGAUu--CCGGg----------UGUGUGG-AAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 118581 0.66 0.99168
Target:  5'- gCACcccGGCCCACgucagggucaGCACCU-ACGCGc -3'
miRNA:   3'- gGUGauuCCGGGUG----------UGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 53337 0.66 0.99458
Target:  5'- aCACgccGGCCCAUAC-CCUga-ACAg -3'
miRNA:   3'- gGUGauuCCGGGUGUGuGGAaugUGU- -5'
28926 3' -51.3 NC_006146.1 + 47666 0.66 0.99458
Target:  5'- aCCACgcaGGGGCCCAaccuCGCCcugUAC-CAg -3'
miRNA:   3'- -GGUGa--UUCCGGGUgu--GUGGa--AUGuGU- -5'
28926 3' -51.3 NC_006146.1 + 100063 0.66 0.993722
Target:  5'- cUCACUcGGGCCCGCuugGCCcUugGCc -3'
miRNA:   3'- -GGUGAuUCCGGGUGug-UGGaAugUGu -5'
28926 3' -51.3 NC_006146.1 + 88992 0.66 0.993722
Target:  5'- -gGCUGAGGCuCCcCAUAUgUUugGCAc -3'
miRNA:   3'- ggUGAUUCCG-GGuGUGUGgAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 45288 0.66 0.993722
Target:  5'- gCCcCUGAGGCCCGcCAgACCaagACcCAg -3'
miRNA:   3'- -GGuGAUUCCGGGU-GUgUGGaa-UGuGU- -5'
28926 3' -51.3 NC_006146.1 + 118921 0.66 0.992758
Target:  5'- aCGCgcccGGCCCGCAUGCCggAgACc -3'
miRNA:   3'- gGUGauu-CCGGGUGUGUGGaaUgUGu -5'
28926 3' -51.3 NC_006146.1 + 36692 0.66 0.992758
Target:  5'- uCCACUAAGGggggaCCAUGCAUCgaaggGCugGg -3'
miRNA:   3'- -GGUGAUUCCg----GGUGUGUGGaa---UGugU- -5'
28926 3' -51.3 NC_006146.1 + 9982 0.66 0.992758
Target:  5'- cUCACgcAGG-CCACGCGCUaUAUACGg -3'
miRNA:   3'- -GGUGauUCCgGGUGUGUGGaAUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.