Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28926 | 3' | -51.3 | NC_006146.1 | + | 7160 | 1.12 | 0.006143 |
Target: 5'- cCCACUAAGGCCCACACACCUUACACAa -3' miRNA: 3'- -GGUGAUUCCGGGUGUGUGGAAUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 7214 | 0.92 | 0.101673 |
Target: 5'- cCCACcAAGGCCCACGCGCCU-GCACAa -3' miRNA: 3'- -GGUGaUUCCGGGUGUGUGGAaUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 6991 | 0.75 | 0.734015 |
Target: 5'- cCCAacAAGGCCCACGCuucauCCU-GCACAa -3' miRNA: 3'- -GGUgaUUCCGGGUGUGu----GGAaUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 49565 | 0.75 | 0.713717 |
Target: 5'- aCCACUGAGGCCCA-GCGCUgagGC-CAg -3' miRNA: 3'- -GGUGAUUCCGGGUgUGUGGaa-UGuGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 61977 | 0.74 | 0.773411 |
Target: 5'- gCCGUUGAGGCCCACGuCACCUgcucgguCGCu -3' miRNA: 3'- -GGUGAUUCCGGGUGU-GUGGAau-----GUGu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 9479 | 0.74 | 0.763736 |
Target: 5'- cCCGC-GGGGCCaCACcCGCCUgGCACAg -3' miRNA: 3'- -GGUGaUUCCGG-GUGuGUGGAaUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 41769 | 0.72 | 0.883776 |
Target: 5'- cCCGCcgGAGGCCCuGCGC-CCggGCGCc -3' miRNA: 3'- -GGUGa-UUCCGGG-UGUGuGGaaUGUGu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 60734 | 0.72 | 0.853371 |
Target: 5'- gCGCUGAGGCCCugGacagagaucCGCCaagACACGc -3' miRNA: 3'- gGUGAUUCCGGGugU---------GUGGaa-UGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 10916 | 0.72 | 0.876514 |
Target: 5'- aCCACUGaaAGGCCCGCGaaaUUUugGCAu -3' miRNA: 3'- -GGUGAU--UCCGGGUGUgugGAAugUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 160915 | 0.72 | 0.883776 |
Target: 5'- gCCACaAuuGCUCACAC-CCUUACACGc -3' miRNA: 3'- -GGUGaUucCGGGUGUGuGGAAUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 129047 | 0.72 | 0.883776 |
Target: 5'- cCCGagcuGGGCCCAgACGCCg-GCGCAg -3' miRNA: 3'- -GGUgau-UCCGGGUgUGUGGaaUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 37124 | 0.72 | 0.853371 |
Target: 5'- cUCugUGagggaaacAGGCCCACugACCUUACu-- -3' miRNA: 3'- -GGugAU--------UCCGGGUGugUGGAAUGugu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 79068 | 0.71 | 0.910432 |
Target: 5'- uCCACc--GGCCaGCACACCUUcuuCACAa -3' miRNA: 3'- -GGUGauuCCGGgUGUGUGGAAu--GUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 40118 | 0.7 | 0.938159 |
Target: 5'- aCGCUuuuggaGAGGCCCGCGauguCCUUGCGg- -3' miRNA: 3'- gGUGA------UUCCGGGUGUgu--GGAAUGUgu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 121709 | 0.7 | 0.922278 |
Target: 5'- cCCAUggucuccGAGGCCCuGCACACCUUcgAgACGg -3' miRNA: 3'- -GGUGa------UUCCGGG-UGUGUGGAA--UgUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 13548 | 0.7 | 0.927823 |
Target: 5'- cCUGCUGcAGGCgCCGgGCGCCgggcUGCGCAa -3' miRNA: 3'- -GGUGAU-UCCG-GGUgUGUGGa---AUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 58855 | 0.7 | 0.927823 |
Target: 5'- aCCGCUGAGcuGCCCACccCACCUgACGgAa -3' miRNA: 3'- -GGUGAUUC--CGGGUGu-GUGGAaUGUgU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 15201 | 0.7 | 0.94295 |
Target: 5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3' miRNA: 3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 159594 | 0.7 | 0.931555 |
Target: 5'- gCUGCUGAGGUCCgaguuguagaacugGCGCugCUgggGCACGc -3' miRNA: 3'- -GGUGAUUCCGGG--------------UGUGugGAa--UGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 131710 | 0.7 | 0.933117 |
Target: 5'- aCUACUGcGGCCUGCugauggGCACCUgagagACACGg -3' miRNA: 3'- -GGUGAUuCCGGGUG------UGUGGAa----UGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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